View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_high_41 (Length: 289)
Name: NF5312_high_41
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 17750042 - 17749771
Alignment:
| Q |
1 |
ttaaaggtttaataggtactaccattctactatcatgtatcctaaaatta-gcttagaacaaaacaaaatcactttgtacatattatcacatgagaaaag |
99 |
Q |
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| T |
17750042 |
ttaaaggtttaataggtactaccattctactatcatgtatcctaaaattaagcttagaacaaaacaaaatcactttgtacatattatgacatgagaaaag |
17749943 |
T |
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| Q |
100 |
aagcaaataatattgttcaatcatttcaactgaccatactgacatataaaaaagaaggcaagttgaaagccagagaaaaattgcatcttgggaacatata |
199 |
Q |
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| T |
17749942 |
aagcaaataatattgttcaatcatttcaactgaccatactgacatataaataagaaggcaagttgaaagccagagaaaaattgcatcttgggaacatata |
17749843 |
T |
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| Q |
200 |
caagcgcaagagactgaaatgagaatgggaaaaagaaggtatgtatgttcacgacagttgcaaggcaacaac |
271 |
Q |
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| T |
17749842 |
caagcgcaagagactgaaatgagaatggaaaaaagaaggtatgtatgttcacgacagttgcaaggcaacaac |
17749771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 43550295 - 43550014
Alignment:
| Q |
1 |
ttaaaggtttaataggtactaccattctactatcatgtatcctaaaatta-gcttagaacaaaacaaaatcactttg-----------tacatattatca |
88 |
Q |
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| T |
43550295 |
ttaaaggtttaataggtactaccattctaccatcatgtatccaaaaattaagcttagaacaaaacaaaatcacagtgatgtctcactatgcatattatgg |
43550196 |
T |
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| Q |
89 |
catgagaaaagaagcaaataata-----ttgttcaatcatttcaactgaccatactgacatataaaaaagaaggcaagttgaaagccagagaaaaattgc |
183 |
Q |
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| T |
43550195 |
catgagaaacgaagcaaataataatatattcttcaatcttttcaactgaacatactgacatataaataagaagacaagttgaaagccagaggaaaattgc |
43550096 |
T |
|
| Q |
184 |
atcttgggaacatatacaagcgcaagagactgaaatgagaatgggaaaaagaaggtatgtatgttcacgacagttgcaaggca |
266 |
Q |
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| T |
43550095 |
atcttttgaacatatacaagcgcaatagactgaaatgagaatgggaaaaagaacgtatgt-tgttcacgaaagttgcaaggca |
43550014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 50902498 - 50902462
Alignment:
| Q |
76 |
gtacatattatcacatgagaaaagaagcaaataatat |
112 |
Q |
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| T |
50902498 |
gtacaaattatgacatgagaaaagaagcaaataatat |
50902462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 50902601 - 50902561
Alignment:
| Q |
2 |
taaaggtttaataggtactaccattctactatcatgtatcc |
42 |
Q |
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| T |
50902601 |
taaaggtttaataggtacaaccattctaccaccatgtatcc |
50902561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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