View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5312_high_44 (Length: 276)
Name: NF5312_high_44
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_high_44 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 258
Target Start/End: Complemental strand, 44833112 - 44832863
Alignment:
| Q |
14 |
attatactttgaagtagaaccagcaaaatgcaaaagatcatagggaacagaatcaaccgaatgtttgtcttcaggttccctttcttcaaacgt-----tc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
44833112 |
attatactttgaagtagaaccagcaaaatgcaaaagatcatagggaacagaatcaaccgaatgtttgtcttcaggttccgtttcttcaaacgtacgtttc |
44833013 |
T |
|
| Q |
109 |
atgcaaataatgtggacgaacacgttcaatgagatgaataattgaattgtaaatgttagtgtattgaataatgatggattgtacctggaaagttaaattc |
208 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||| ||||||||||||||||||| |
|
|
| T |
44833012 |
atgcaaatggcgtggacgaacacgttcaatgagatgaataattgaattgtaaatgttagtgtaatgaataattattgattatacctggaaagttaaattc |
44832913 |
T |
|
| Q |
209 |
ttcctgagaagtgcgtttgcttgagtgcagaagctgataggggaaggatc |
258 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44832912 |
ttcctgagaagtgcgtttgcttgagtacagaagctgataggggaaggatc |
44832863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 44868732 - 44868670
Alignment:
| Q |
182 |
atggattgtacctggaaagttaaattcttcctgagaagtgcgtttgcttgagtgcagaagctg |
244 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||| | |||||| ||||||||| |
|
|
| T |
44868732 |
atggattgtacctggaaggttaaattcttcctgagaagaccgttggtttgagtccagaagctg |
44868670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 44858121 - 44858067
Alignment:
| Q |
190 |
tacctggaaagttaaattcttcctgagaagtgcgtttgcttgagtgcagaagctg |
244 |
Q |
| |
|
||||||||| ||||||||||| |||||||| |||||||||||||| || |||||| |
|
|
| T |
44858121 |
tacctggaaggttaaattctttctgagaagagcgtttgcttgagtacaaaagctg |
44858067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 44845039 - 44844967
Alignment:
| Q |
187 |
ttgtacctggaaagttaaattcttcctgagaagtgcgtttgcttgagtgcagaagctgataggggaaggatct |
259 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||||| ||||||| |||||| ||||||| ||||||||||||| |
|
|
| T |
44845039 |
ttgtacctggaaggttaagttctttctgagaagagcgtttgtttgagtaaagaagctagcaggggaaggatct |
44844967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 44893921 - 44893882
Alignment:
| Q |
189 |
gtacctggaaagttaaattcttcctgagaagtgcgtttgc |
228 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
44893921 |
gtacctggaaggttaaattcttcctgagaagagcgtttgc |
44893882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 12930587 - 12930640
Alignment:
| Q |
191 |
acctggaaagttaaattcttcctgagaagtgcgtttgcttgagtgcagaagctg |
244 |
Q |
| |
|
|||||||| ||||| ||||| || ||||| |||||||||||||| ||||||||| |
|
|
| T |
12930587 |
acctggaaggttaagttctttctaagaagcgcgtttgcttgagtccagaagctg |
12930640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University