View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_high_47 (Length: 263)
Name: NF5312_high_47
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_high_47 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 53351886 - 53352053
Alignment:
| Q |
19 |
caaagttgttaaagaactgaaagactttggttttttcttcttcactaaacggccccttcttcacatctggtcgaaggtgattataccatcttagacgaca |
118 |
Q |
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| T |
53351886 |
caaagttgttaaagaaccgaaagactttggttttttcttcttcactaaacggccccttcttcacatctggtcgaaggtgattataccatcttagacgaca |
53351985 |
T |
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| Q |
119 |
acttttaccgcaacgtataagccccacatttcttgatacctcgttccattccaatttctggttccatg |
186 |
Q |
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| T |
53351986 |
acttttaccgcaacgtataagccccgcatttcttgatacctcgttccattccaatttctggttccatg |
53352053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 9e-45; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 31 - 166
Target Start/End: Complemental strand, 38180761 - 38180626
Alignment:
| Q |
31 |
agaactgaaagactttggttttttcttcttcactaaacggccccttcttcacatctggtcgaaggtgattataccatcttagacgacaacttttaccgca |
130 |
Q |
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| T |
38180761 |
agaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtgattataccatcttagacgacaacttttaccgca |
38180662 |
T |
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| Q |
131 |
acgtataagccccacatttcttgatacctcgttcca |
166 |
Q |
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| T |
38180661 |
acgtataagccccgcattttttgatacctcgttcca |
38180626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 31 - 186
Target Start/End: Original strand, 38190370 - 38190520
Alignment:
| Q |
31 |
agaactgaaagactttggttttttcttcttcactaaacggccccttcttcacatctggtcgaaggtgattataccatcttagacgacaacttttaccgca |
130 |
Q |
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| T |
38190370 |
agaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtgattataccatcttagacgacaacttttaccgca |
38190469 |
T |
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| Q |
131 |
acgtataagccccacatttcttgatacctcgttccattccaatttctggttccatg |
186 |
Q |
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| T |
38190470 |
acgtataagccccgcattttttgatacctcgttcc-----aatttctggttccatg |
38190520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 31 - 166
Target Start/End: Complemental strand, 38207985 - 38207850
Alignment:
| Q |
31 |
agaactgaaagactttggttttttcttcttcactaaacggccccttcttcacatctggtcgaaggtgattataccatcttagacgacaacttttaccgca |
130 |
Q |
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| T |
38207985 |
agaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtgattataccatcttagacgacaacttttaccgca |
38207886 |
T |
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| Q |
131 |
acgtataagccccacatttcttgatacctcgttcca |
166 |
Q |
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| T |
38207885 |
acgtataagccccgcattttttgatacctcgttcca |
38207850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 31 - 186
Target Start/End: Original strand, 38217595 - 38217745
Alignment:
| Q |
31 |
agaactgaaagactttggttttttcttcttcactaaacggccccttcttcacatctggtcgaaggtgattataccatcttagacgacaacttttaccgca |
130 |
Q |
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|||||| ||| ||||| | |||||||||||||||||| || ||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
38217595 |
agaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtgattataccatcttagacgacaacttttaccgca |
38217694 |
T |
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| Q |
131 |
acgtataagccccacatttcttgatacctcgttccattccaatttctggttccatg |
186 |
Q |
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| T |
38217695 |
acgtataagccccgcattttttgatacctcgttcc-----aatttctggttccatg |
38217745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 31 - 166
Target Start/End: Complemental strand, 38456121 - 38455986
Alignment:
| Q |
31 |
agaactgaaagactttggttttttcttcttcactaaacggccccttcttcacatctggtcgaaggtgattataccatcttagacgacaacttttaccgca |
130 |
Q |
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|||||| ||| ||||| | |||||||||||||||||| || ||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
38456121 |
agaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtgattataccatcttagacgacaacttttaccgca |
38456022 |
T |
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| Q |
131 |
acgtataagccccacatttcttgatacctcgttcca |
166 |
Q |
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| T |
38456021 |
acgtataagccccgcattttttgatacctcgttcca |
38455986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 42 - 186
Target Start/End: Original strand, 26033506 - 26033645
Alignment:
| Q |
42 |
actttggttttttcttcttcactaaacggccccttcttcacatctggtcgaaggtgattataccatcttagacgacaacttttaccgcaacgtataagcc |
141 |
Q |
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||||| |||| ||||||||||||||| || ||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26033506 |
acttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtgattataccatcttagacgacaacttttaccgcaacgtataagcc |
26033605 |
T |
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| Q |
142 |
ccacatttcttgatacctcgttccattccaatttctggttccatg |
186 |
Q |
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| T |
26033606 |
cggcatttttcgatacctcgttcc-----aatttctggttccatg |
26033645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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