View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_high_59 (Length: 244)
Name: NF5312_high_59
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_high_59 |
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| [»] scaffold2086 (1 HSPs) |
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| [»] scaffold1996 (2 HSPs) |
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| [»] scaffold0891 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 35754524 - 35754348
Alignment:
| Q |
1 |
tctaactcattgtggttggaattctacaattgaaaccatttcttcaggtgttcctactatttgttggcccttctttgctgagcaacaaacaaattgcaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35754524 |
tctaactcattgtggttggaattctacaattgaaaccatttcttcaggtgttcctactatttgttggcccttctttgctgagcaacaaacaaattgcaag |
35754425 |
T |
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| Q |
101 |
tatttatgcgacacttggaaagtaggaatggaaattaacaatgatgtaaaaagggaggagataacagaacttgtact |
177 |
Q |
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| T |
35754424 |
tatttatgcgacacttggaaagtaggaatggaaattaacaatgatgtaaaaagggaagagataacagaacttgtact |
35754348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 5 - 174
Target Start/End: Complemental strand, 35866095 - 35865926
Alignment:
| Q |
5 |
actcattgtggttggaattctacaattgaaaccatttcttcaggtgttcctactatttgttggcccttctttgctgagcaacaaacaaattgcaagtatt |
104 |
Q |
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|||||||||||||||||||||||| ||||||| ||||| | ||||| ||||||||||||||||| |||||||||||||||||||||||||| | ||||| |
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| T |
35866095 |
actcattgtggttggaattctacacttgaaactatttcctatggtgtgcctactatttgttggcctttctttgctgagcaacaaacaaattgtaggtatt |
35865996 |
T |
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| Q |
105 |
tatgcgacacttggaaagtaggaatggaaattaacaatgatgtaaaaagggaggagataacagaacttgt |
174 |
Q |
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| T |
35865995 |
tatgcaacacttggaaaatagggatggaaattaactatgatgtgaaaagagaagagataagagaacttgt |
35865926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 35774645 - 35774474
Alignment:
| Q |
3 |
taactcattgtggttggaattctacaattgaaaccatttcttcaggtgttcctactatttgttggcccttctttgctgagcaacaaacaaattgcaagta |
102 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||| | ||||| ||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
35774645 |
taactcattgtggttggaattctacacttgaaactatttcctatggtgtgcctactatttgttggcctttctttgctgagcaacaaacaaattgttggta |
35774546 |
T |
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| Q |
103 |
tttatgcgacacttggaaagtaggaatggaaattaacaatgatgtaaaaagggaggagataacagaacttgt |
174 |
Q |
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||||||| | |||||||| |||| |||||||||||| ||||||| |||||||| || |||||||||||||| |
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| T |
35774545 |
tttatgcaagtcttggaaaatagggatggaaattaaccatgatgttaaaagggatgatataacagaacttgt |
35774474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 174
Target Start/End: Complemental strand, 35848424 - 35848255
Alignment:
| Q |
5 |
actcattgtggttggaattctacaattgaaaccatttcttcaggtgttcctactatttgttggcccttctttgctgagcaacaaacaaattgcaagtatt |
104 |
Q |
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|||||||||||||||||||||||| ||||||| ||||| | ||||| ||||||||||||||||| ||||||| |||||||||||||||||| | ||||| |
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| T |
35848424 |
actcattgtggttggaattctacacttgaaactatttcctatggtgtgcctactatttgttggcctttctttgttgagcaacaaacaaattgtaggtatt |
35848325 |
T |
|
| Q |
105 |
tatgcgacacttggaaagtaggaatggaaattaacaatgatgtaaaaagggaggagataacagaacttgt |
174 |
Q |
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||||| ||||||||||| | || |||||||||||| ||||||| ||||| || ||||||| |||||||| |
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| T |
35848324 |
tatgcaacacttggaaaattgggatggaaattaactatgatgtgaaaagtgaagagataattgaacttgt |
35848255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 35735683 - 35735590
Alignment:
| Q |
3 |
taactcattgtggttggaattctacaattgaaaccatttcttcaggtgttcctactatttgttggcccttctttgctgagcaacaaacaaattg |
96 |
Q |
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|||||||||||||||||||||| || |||| | |||||| |||| |||| ||| ||||||| |||||||||||||||||||||||||| |
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| T |
35735683 |
taactcattgtggttggaattcatcacttgagagtatttctgaaggtaagcctatgattggttggcctttctttgctgagcaacaaacaaattg |
35735590 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 2 - 174
Target Start/End: Original strand, 308 - 480
Alignment:
| Q |
2 |
ctaactcattgtggttggaattctacaattgaaaccatttcttcaggtgttcctactatttgttggcccttctttgctgagcaacaaacaaattgcaagt |
101 |
Q |
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||||||||||||||||||||||||||| ||||| | || ||||| ||| | ||||||||||||||||| |||||||||||||||||||||||||| | || |
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| T |
308 |
ctaactcattgtggttggaattctacacttgaagctatatcttctggtatgcctactatttgttggcctttctttgctgagcaacaaacaaattgtaggt |
407 |
T |
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| Q |
102 |
atttatgcgacacttggaaagtaggaatggaaattaacaatgatgtaaaaagggaggagataacagaacttgt |
174 |
Q |
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|||||||| ||||||||||| |||| |||||||||||| ||||||| |||||||| || |||| |||| |||| |
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| T |
408 |
atttatgcaacacttggaaaatagggatggaaattaaccatgatgttaaaagggatgatataaaagaaattgt |
480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 2 - 174
Target Start/End: Original strand, 308 - 480
Alignment:
| Q |
2 |
ctaactcattgtggttggaattctacaattgaaaccatttcttcaggtgttcctactatttgttggcccttctttgctgagcaacaaacaaattgcaagt |
101 |
Q |
| |
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||||||||||||||||||||||||||| ||||| | || ||||| ||| | ||||||||||||||||| |||||||||||||||||||||||||| | || |
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| T |
308 |
ctaactcattgtggttggaattctacacttgaagctatatcttctggtatgcctactatttgttggcctttctttgctgagcaacaaacaaattgtaggt |
407 |
T |
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| Q |
102 |
atttatgcgacacttggaaagtaggaatggaaattaacaatgatgtaaaaagggaggagataacagaacttgt |
174 |
Q |
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|||||||| ||||||||||| |||| |||||||||||| ||||||| |||||||| || |||| |||| |||| |
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| T |
408 |
atttatgcaacacttggaaaatagggatggaaattaaccatgatgttaaaagggatgatataaaagaaattgt |
480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 174
Target Start/End: Original strand, 1083 - 1173
Alignment:
| Q |
84 |
aacaaacaaattgcaagtatttatgcgacacttggaaagtaggaatggaaattaacaatgatgtaaaaagggaggagataacagaacttgt |
174 |
Q |
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||||||||||||| | |||||||||| ||||||||||| | || |||||||||||| ||||||| |||||||| |||||||| |||||||| |
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| T |
1083 |
aacaaacaaattgtaggtatttatgcaacacttggaaaattgggatggaaattaaccatgatgtgaaaagggaagagataaccgaacttgt |
1173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 5 - 175
Target Start/End: Original strand, 3448 - 3618
Alignment:
| Q |
5 |
actcattgtggttggaattctacaattgaaaccatttcttcaggtgttcctactatttgttggcccttctttgctgagcaacaaacaaattgcaagtatt |
104 |
Q |
| |
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|||||||||||||||||||||||| ||||||| ||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||| | ||||| |
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| T |
3448 |
actcattgtggttggaattctacacttgaaactatttcttatggtgtgcctactatttgttggcctttctttgctgaacaacaaacaaattgtaggtatt |
3547 |
T |
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| Q |
105 |
tatgcgacacttggaaagtaggaatggaaattaacaatgatgtaaaaagggaggagataacagaacttgta |
175 |
Q |
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||||| | |||||||| |||| |||||||||||| ||||||| |||||||| || ||||| ||| ||||| |
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| T |
3548 |
tatgcaagtcttggaaaatagggatggaaattaaccatgatgttaaaagggatgatataactgaaattgta |
3618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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