View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5312_high_7 (Length: 458)
Name: NF5312_high_7
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_high_7 |
 | |
|
| [»] scaffold0891 (1 HSPs) |
| | |
|
| [»] scaffold2086 (1 HSPs) |
| | |
|
| [»] scaffold1996 (1 HSPs) |
| | |
|
| [»] scaffold1268 (1 HSPs) |
| | |
|
| [»] scaffold1267 (1 HSPs) |
| | |
|
| [»] scaffold2116 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 35754553 - 35754993
Alignment:
| Q |
1 |
cttggtcttgcatgcaccaactagttatgtatcctctatccttaacttcatctagaaaatcttgtggcaaagttgaaatttcttcacccattactacatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35754553 |
cttggtcttgcatgcaccaactagttatgtatcctctatccttaacttcatctagaaaatcttgtggcaaagttgaaatttcttcacccattactacatc |
35754652 |
T |
|
| Q |
101 |
tggtctcattattcataaaaatggtaatttactatttgctattccccaagcaaattctttcaagtgatgatctgtcataacagttacacttccataatta |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35754653 |
tggtctcattatccataaaaatggtaatttactatttgctattccccaagcaaattctttcaagtgatgatctgtcataacagttacacttccataatta |
35754752 |
T |
|
| Q |
201 |
acgtacaaaactgagcaaggtttccatttattcaaccattttgtgcattctaggtcacttttccataaacttgaaccatttgccttaaaaccatgttcct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35754753 |
acgtacaaaactgagcaaggtttccatttattcaaccattttgtgcattctaggtcacttttccataaacttgaaccatttgccttaaaaccatgttcct |
35754852 |
T |
|
| Q |
301 |
ttttaggaaagttgctaccaagcatgtgaagtggaccaatgctatatatgttagggtttttggtcttaagcgtagcaatgacttcatcttctaattcttc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35754853 |
ttttaggaaagttgctaccaagcatgtgaagtggaccaatgctatatatgttagggtttttggtcttaagtgtagcaatgacttcatcttctaattcttc |
35754952 |
T |
|
| Q |
401 |
aaatgtgttgattataattgttgatgatctcaaacagtttt |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35754953 |
aaatgtgttgattataattgttgatgatctcaaacagtttt |
35754993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 432
Target Start/End: Original strand, 35848470 - 35848888
Alignment:
| Q |
14 |
gcaccaactagttatgtatcctctatccttaacttcatctagaaaatcttgtggcaaagttgaaatttcttcacccattactacatctggtctcattatt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| | ||||||||||||||||||||||||||||| || |
|
|
| T |
35848470 |
gcaccaactagttatgtatcctctatccttaacttcatctagaaactcttgaggcaaagatgaagtctcttcacccattactacatctggtctcataatc |
35848569 |
T |
|
| Q |
114 |
cataaaaatggtaatttactatttgctattccccaagcaaattctttcaagtgatgatctgtcataacagttacacttccataattaacgtacaaaactg |
213 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| || | |||| |
|
|
| T |
35848570 |
cacaaaaatggtaatttgctatttgctattccccaagcaaattctttcaagtgatgatctgtcataacagttatacttccgtaattaatatatagtactg |
35848669 |
T |
|
| Q |
214 |
agcaaggtttccatttattcaaccattttgtgcattctaggtcacttttccataaacttgaaccatttgccttaaaaccatgttcctttttaggaaagtt |
313 |
Q |
| |
|
||| ||||| ||||||| ||||||||||| ||||||| |||| ||||||| |||||||||||| |||| |||||| | ||| || | |||||| | |
|
|
| T |
35848670 |
agccaggttcccatttactcaaccattttatgcattcagagtcatttttccaaaaacttgaaccacttgctgcaaaaccgttttctttctcaggaaaatg |
35848769 |
T |
|
| Q |
314 |
gctaccaagcatgtgaagtggaccaatgctatatatgttagggtttttggtcttaagcgtagcaatgacttcatcttctaattcttcaaatgtgttgatt |
413 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| | |||| || | | | ||||| |||||||||||||||||||||| || |
|
|
| T |
35848770 |
cctaccaagcatgtgaagtgggccaatgctatatatgttagggtttttggccctaagggtgtccagggcttcaccttctaattcttcaaatgtgttaatg |
35848869 |
T |
|
| Q |
414 |
ataattgttgatgatctca |
432 |
Q |
| |
|
|| |||| ||||||||||| |
|
|
| T |
35848870 |
atgattgctgatgatctca |
35848888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 432
Target Start/End: Original strand, 35866141 - 35866559
Alignment:
| Q |
14 |
gcaccaactagttatgtatcctctatccttaacttcatctagaaaatcttgtggcaaagttgaaatttcttcacccattactacatctggtctcattatt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| | ||||||||||||||||||||||||||||| || |
|
|
| T |
35866141 |
gcaccaactagttatgtatcctctatccttaacttcatctagaaactcttgaggcaaagatgaagtctcttcacccattactacatctggtctcataatc |
35866240 |
T |
|
| Q |
114 |
cataaaaatggtaatttactatttgctattccccaagcaaattctttcaagtgatgatctgtcataacagttacacttccataattaacgtacaaaactg |
213 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| || | |||| |
|
|
| T |
35866241 |
cacaaaaatggtaatttgctatttgctattccccaagcaaattctttcaagtgatgatctgtcataacagttatacttccgtaattaatatatagtactg |
35866340 |
T |
|
| Q |
214 |
agcaaggtttccatttattcaaccattttgtgcattctaggtcacttttccataaacttgaaccatttgccttaaaaccatgttcctttttaggaaagtt |
313 |
Q |
| |
|
||| ||||| ||||||| ||||||||||| ||||||| |||| ||||||| |||||||||||| |||| |||||| | ||| || | |||||| | |
|
|
| T |
35866341 |
agccaggttcccatttactcaaccattttatgcattcagagtcatttttccaaaaacttgaaccacttgctgcaaaaccgttttctttctcaggaaaatg |
35866440 |
T |
|
| Q |
314 |
gctaccaagcatgtgaagtggaccaatgctatatatgttagggtttttggtcttaagcgtagcaatgacttcatcttctaattcttcaaatgtgttgatt |
413 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| | |||| || | | | ||||| |||||||||||||||||||||| || |
|
|
| T |
35866441 |
cctaccaagcatgtgaagtgggccaatgctatatatgttagggtttttggccctaagggtgtccagggcttcaccttctaattcttcaaatgtgttaatg |
35866540 |
T |
|
| Q |
414 |
ataattgttgatgatctca |
432 |
Q |
| |
|
|| |||| ||||||||||| |
|
|
| T |
35866541 |
atgattgctgatgatctca |
35866559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 441
Target Start/End: Original strand, 35774689 - 35775116
Alignment:
| Q |
14 |
gcaccaactagttatgtatcctctatccttaacttcatctagaaaatcttgtggcaaagttgaaatttcttcacccattactacatctggtctcattatt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||| ||| |
|
|
| T |
35774689 |
gcaccaactagttatgtatcctctatccttaacctcatctagaaaatcttgtggcaaagttgaagtctcttcacccattgctacatctggtctcaatatc |
35774788 |
T |
|
| Q |
114 |
cataaaaatggtaatttactatttgctattccccaagcaaattctttcaagtgatgatctgtcataacagttacacttccataattaacgtacaaaactg |
213 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| || | |||| |
|
|
| T |
35774789 |
cataaaaaaggtaatttactatttgctattccccaagcaaattctttcaagtgatgatttgtcataacagttatacttccataattaatatatagtactg |
35774888 |
T |
|
| Q |
214 |
agcaaggtttccatttattcaaccattttgtgcattctaggtcacttttccataaacttgaaccatttgccttaaaaccatgttcctttttaggaaagtt |
313 |
Q |
| |
|
||||||||| ||||||| ||||||||||| | ||||| ||||| |||||||||||| |||||| |||| |||||||||| ||| || | |||||| | |
|
|
| T |
35774889 |
agcaaggttcccatttactcaaccattttatacattccgggtcagatttccataaactcgaaccacttgctttaaaaccattttctttctcaggaaaatg |
35774988 |
T |
|
| Q |
314 |
gctaccaagcatgtgaagtggaccaatgctatatatgttagggtttttggtcttaagcgtagcaatgacttcatcttctaattcttcaaatgtgttgatt |
413 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||| || || |||| | |||| || ||| | |||| |||| |||||||| || | ||| || |
|
|
| T |
35774989 |
tctaccaagcatgtgaatcgggccaatgctatatatgtttggattgttggccctaagggtgtcaagggtttcaccttccaattcttcgaacgagttaatg |
35775088 |
T |
|
| Q |
414 |
ataattgttgatgatctcaaacagtttt |
441 |
Q |
| |
|
|| ||||| |||||||||||||| |||| |
|
|
| T |
35775089 |
attattgtcgatgatctcaaacaatttt |
35775116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 98 - 428
Target Start/End: Original strand, 35735808 - 35736138
Alignment:
| Q |
98 |
atctggtctcattattcataaaaatggtaatttactatttgctattccccaagcaaattctttcaagtgatgatctgtcataacagttacacttccataa |
197 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||| || || || | || |||| |||| || |||||||||| |
|
|
| T |
35735808 |
atctggtctatttatccataaaaatggtaatttactatttgctaaaccccaagcaaattcattaaaatgtttctcactcatcacagctatacttccataa |
35735907 |
T |
|
| Q |
198 |
ttaacgtacaaaactgagcaaggtttccatttattcaaccattttgtgcattctaggtcacttttccataaacttgaaccatttgccttaaaaccatgtt |
297 |
Q |
| |
|
|||| || | ||||| | ||||| ||||| | |||||||| | ||| || ||| ||||||| | |||||||||||| | || || |||| || |
|
|
| T |
35735908 |
ttaatatatatcactgaactaggttcccattggtctaaccatttgatacatgttaaatcatttttccaaagacttgaaccattggatttgaacccatttt |
35736007 |
T |
|
| Q |
298 |
cctttttaggaaagttgctaccaagcatgtgaagtggaccaatgctatatatgttagggtttttggtcttaagcgtagcaatgacttcatcttctaattc |
397 |
Q |
| |
|
|||||| |||||| ||| || | || | |||||||||||||| | |||||||| || ||| ||| | |||| | | ||| ||||||| ||||||||| |
|
|
| T |
35736008 |
ccttttcaggaaaattgttagctagaaattgaagtggaccaatattgtatatgttgggatttatggccataagagcatcaaggacttcactttctaattc |
35736107 |
T |
|
| Q |
398 |
ttcaaatgtgttgattataattgttgatgat |
428 |
Q |
| |
|
|| | |||||| ||||| |||| ||||||| |
|
|
| T |
35736108 |
tttgactgtgttaattatgattgctgatgat |
35736138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 441
Target Start/End: Complemental strand, 3402 - 2975
Alignment:
| Q |
14 |
gcaccaactagttatgtatcctctatccttaacttcatctagaaaatcttgtggcaaagttgaaatttcttcacccattactacatctggtctcattatt |
113 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| | |||||||||||| ||||||||||||||| ||| |
|
|
| T |
3402 |
gcaccaactagttatgtatcctttatccttaacttcatctagaaactcttgtggcaaagttgaagtctcttcacccattgctacatctggtctcaatatc |
3303 |
T |
|
| Q |
114 |
cataaaaatggtaatttactatttgctattccccaagcaaattctttcaagtgatgatctgtcataacagttacacttccataattaacgtacaaaactg |
213 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| || | |||| |
|
|
| T |
3302 |
cataaaaaaggtaatttactatttgctattccccaagcaaattctttcaagtgatgatttgtcataacagttatacttccataattaatatatagtactg |
3203 |
T |
|
| Q |
214 |
agcaaggtttccatttattcaaccattttgtgcattctaggtcacttttccataaacttgaaccatttgccttaaaaccatgttcctttttaggaaagtt |
313 |
Q |
| |
|
||||||||| ||||||| ||||||||||| | ||||| ||||| |||||||||||| |||||| |||| |||||||| | ||| || | |||||| | |
|
|
| T |
3202 |
agcaaggttcccatttactcaaccattttatacattccgggtcagatttccataaactcgaaccacttgctttaaaacctttttctttctcaggaaaatg |
3103 |
T |
|
| Q |
314 |
gctaccaagcatgtgaagtggaccaatgctatatatgttagggtttttggtcttaagcgtagcaatgacttcatcttctaattcttcaaatgtgttgatt |
413 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||| || || |||| | |||| || ||| | |||| |||| |||||||| || ||||| || |
|
|
| T |
3102 |
tctaccaagcatgtgaatcgggccaatgctatatatgtttggattgttggccctaagggtgtcaagggtttcaccttccaattcttcgaacgtgttaatg |
3003 |
T |
|
| Q |
414 |
ataattgttgatgatctcaaacagtttt |
441 |
Q |
| |
|
|| ||||| |||||||||||||| |||| |
|
|
| T |
3002 |
attattgtcgatgatctcaaacaatttt |
2975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 278 - 1
Alignment:
| Q |
1 |
cttggtcttgcatgcaccaactagttatgtatcctctatccttaacttcatctagaaaatcttgtggcaaagttgaaatttcttcacccattactacatc |
100 |
Q |
| |
|
|||| ||||| | ||||||||||||||||||||||||||| || || ||||||||||| ||||||||||||| |||| |||| |||||||||||||||| |
|
|
| T |
278 |
cttgatcttgaaagcaccaactagttatgtatcctctatcttttacctcatctagaaactcttgtggcaaagatgaagtttccacacccattactacatc |
179 |
T |
|
| Q |
101 |
tggtctcattattcataaaaatggtaatttactatttgctattccccaagcaaattctttcaagtgatgatctgtcataacagttacacttccataatta |
200 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
178 |
tggtctcattatccataaaaatggcaatttactatttgctattccccaagcaaattctttcaagtggtgatcagtcataacagttacacttccataatta |
79 |
T |
|
| Q |
201 |
acgtacaaaactgagcaaggtttccatttattcaaccattttgtgcattctaggtcacttttccataaacttgaacca |
278 |
Q |
| |
|
|| || | ||||||||||||| ||||| |||||||||| || |||||||| ||||| |||||||| ||| |||||| |
|
|
| T |
78 |
acatataggactgagcaaggttcccattgattcaaccatgttatgcattctgggtcagatttccatagactcgaacca |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 278 - 1
Alignment:
| Q |
1 |
cttggtcttgcatgcaccaactagttatgtatcctctatccttaacttcatctagaaaatcttgtggcaaagttgaaatttcttcacccattactacatc |
100 |
Q |
| |
|
|||| ||||| | ||||||||||||||||||||||||||| || || ||||||||||| ||||||||||||| |||| |||| |||||||||||||||| |
|
|
| T |
278 |
cttgatcttgaaagcaccaactagttatgtatcctctatcttttacctcatctagaaactcttgtggcaaagatgaagtttccacacccattactacatc |
179 |
T |
|
| Q |
101 |
tggtctcattattcataaaaatggtaatttactatttgctattccccaagcaaattctttcaagtgatgatctgtcataacagttacacttccataatta |
200 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
178 |
tggtctcattatccataaaaatggcaatttactatttgctattccccaagcaaattctttcaagtggtgatcagtcataacagttacacttccataatta |
79 |
T |
|
| Q |
201 |
acgtacaaaactgagcaaggtttccatttattcaaccattttgtgcattctaggtcacttttccataaacttgaacca |
278 |
Q |
| |
|
|| || | ||||||||||||| ||||| |||||||||| || |||||||| ||||| |||||||| ||| |||||| |
|
|
| T |
78 |
acatataggactgagcaaggttcccattgattcaaccatgttatgcattctgggtcagatttccatagactcgaacca |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1268 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: scaffold1268
Description:
Target: scaffold1268; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 305 - 436
Target Start/End: Complemental strand, 2231 - 2100
Alignment:
| Q |
305 |
aggaaagttgctaccaagcatgtgaagtggaccaatgctatatatgttagggtttttggtcttaagcgtagcaatgacttcatcttctaattcttcaaat |
404 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| | |||| || ||| ||||| |||| |||||||||||| |
|
|
| T |
2231 |
aggaaagtgcctaccaagcatgtgaagtggaccaatgtcatatatgttagggtttttggccctaagggtgtcaagtgcttcaccttccaattcttcaaat |
2132 |
T |
|
| Q |
405 |
gtgttgattataattgttgatgatctcaaaca |
436 |
Q |
| |
|
|||||||||||||| |||||||||| ||||| |
|
|
| T |
2131 |
gtgttgattataatcattgatgatcttaaaca |
2100 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1267 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: scaffold1267
Description:
Target: scaffold1267; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 305 - 436
Target Start/End: Complemental strand, 2231 - 2100
Alignment:
| Q |
305 |
aggaaagttgctaccaagcatgtgaagtggaccaatgctatatatgttagggtttttggtcttaagcgtagcaatgacttcatcttctaattcttcaaat |
404 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| | |||| || ||| ||||| |||| |||||||||||| |
|
|
| T |
2231 |
aggaaagtgcctaccaagcatgtgaagtggaccaatgtcatatatgttagggtttttggccctaagggtgtcaagtgcttcaccttccaattcttcaaat |
2132 |
T |
|
| Q |
405 |
gtgttgattataattgttgatgatctcaaaca |
436 |
Q |
| |
|
|||||||||||||| |||||||||| ||||| |
|
|
| T |
2131 |
gtgttgattataatcattgatgatcttaaaca |
2100 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2116 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold2116
Description:
Target: scaffold2116; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 305 - 430
Target Start/End: Complemental strand, 1065 - 940
Alignment:
| Q |
305 |
aggaaagttgctaccaagcatgtgaagtggaccaatgctatatatgttagggtttttggtcttaagcgtagcaatgacttcatcttctaattcttcaaat |
404 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| | |||| || ||| ||||| |||| ||||| ||||| |
|
|
| T |
1065 |
aggaaagtgcctaccaagcatgtgaagtggaccaatgtcatatatgttagggtttttggccctaagggtgtcaagtgcttcaccttccaattcatcaaaa |
966 |
T |
|
| Q |
405 |
gtgttgattataattgttgatgatct |
430 |
Q |
| |
|
|||||||||||||| |||||||||| |
|
|
| T |
965 |
gtgttgattataatcattgatgatct |
940 |
T |
|
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