View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_high_71 (Length: 230)
Name: NF5312_high_71
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_high_71 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 31079236 - 31079015
Alignment:
| Q |
1 |
aaaactagagtctaaaccatgttaccaacaaatcatattaactagaacagcaaacataaaaaataatggtgaatgaaaacaacacactaaaaaccagaaa |
100 |
Q |
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| T |
31079236 |
aaaactagagtctaaaccatgttaccaacaaatcatattaactagaacagcaaacataaaaaataatggtgaatgaaaacaacacactagaaaccagaaa |
31079137 |
T |
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| Q |
101 |
gagcgatgccgcaattaccgtcgagagcgacgatgacaacgatagagaaaaggtacaaaaacagtggttggtagtgagtgatgaaaggagaatgat-aga |
199 |
Q |
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| T |
31079136 |
gaacgatgccgcaattactctcgagagcgacgatgacagcgatagagagaaggcacaaaaacagtggttggtagtgagtgatgaaagaagcatgatcaga |
31079037 |
T |
|
| Q |
200 |
gataaaagtgagagtgacgatg |
221 |
Q |
| |
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|||| ||||||||||||||||| |
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| T |
31079036 |
gatacaagtgagagtgacgatg |
31079015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 61 - 151
Target Start/End: Complemental strand, 9164385 - 9164295
Alignment:
| Q |
61 |
aaataatggtgaatgaaaacaacacactaaaaaccagaaagagcgatgccgcaattaccgtcgagagcgacgatgacaacgatagagaaaa |
151 |
Q |
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| T |
9164385 |
aaataatggtgaacgaaaacaacacattagaaactagaaagaacgatgccgcaattactgttgagagcgacgacgacaacgatggagaaaa |
9164295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 10671938 - 10671889
Alignment:
| Q |
1 |
aaaactagagtctaaaccatgttaccaacaaatcatattaactagaacag |
50 |
Q |
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| T |
10671938 |
aaaactagagtctacaccaagttaccaacaaagcatattaaatagaacag |
10671889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 185
Target Start/End: Complemental strand, 51488796 - 51488667
Alignment:
| Q |
58 |
aaaaaataatggtgaatgaaaacaacacactaaaaaccagaaagagcgatgccg-----caattaccgtcgagagcgacgatgacaacgatagagaaaag |
152 |
Q |
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|||||| ||||||||| ||||||||||||| | |||| ||||||| |||||||| |||||||||| ||||||||| |||||||||||||| || |
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| T |
51488796 |
aaaaaagaatggtgaacgaaaacaacacaccagaaactagaaagaacgatgccgcaacacaattaccgttgagagcgac---gacaacgatagagagaat |
51488700 |
T |
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| Q |
153 |
gtacaaaaacagtggttggtagtgagtgatgaa |
185 |
Q |
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| T |
51488699 |
gcacagaaacagtggtcagtagtgagtgatgaa |
51488667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 185
Target Start/End: Original strand, 7043799 - 7043926
Alignment:
| Q |
58 |
aaaaaataatggtgaatgaaaacaacacactaaaaaccagaaagagcgatgccgcaattaccgtcgagagcgacgatgacaacgatagagaaaaggtaca |
157 |
Q |
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|||||| ||||||||| ||||||||||||| | |||| ||| ||| |||||| ||||||| | ||||| |||| ||||| ||||||| |||| ||| |
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| T |
7043799 |
aaaaaagaatggtgaacgaaaacaacacaccagaaactagacagaaggatgccacaattacagctaagagcaacgacaacaacaatagagagaaggcaca |
7043898 |
T |
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| Q |
158 |
aaaacagtggttggtagtgagtgatgaa |
185 |
Q |
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|||||||||| ||||||||||||||| |
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| T |
7043899 |
taaacagtggtcagtagtgagtgatgaa |
7043926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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