View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_high_72 (Length: 228)
Name: NF5312_high_72
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_high_72 |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 31045666 - 31045448
Alignment:
| Q |
7 |
ctatgaattgtcaaaatattcatatataaatcagaaaattttggttcaaatagttactatatatagggataggtgtctcacatgctctctctagtaagat |
106 |
Q |
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| T |
31045666 |
ctatgaattgtcgaaatattcatatataaatcagaaaattttggttcaaatagttactatatatagggataggtgtcgcacatgatctctctagtaagat |
31045567 |
T |
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| Q |
107 |
gattcattcaagtttccatcattattttaaaa--tttagtctgtacttcagtcctctgttgtatgcttttgctggtagcaattcatatcttttgcagtaa |
204 |
Q |
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| T |
31045566 |
gattcattcaagtttccatcattattttaaaaatttaagtttgtacctcggtcctctgttgtattcctttgctggtagcaattcatatcttttgcagtaa |
31045467 |
T |
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| Q |
205 |
tcctgataaactgtagaag |
223 |
Q |
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||||||||||||||||||| |
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| T |
31045466 |
tcctgataaactgtagaag |
31045448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 92 - 192
Target Start/End: Complemental strand, 31035379 - 31035277
Alignment:
| Q |
92 |
tctctctagtaagatgattcattcaagtttccatcattattttaaaa--tttagtctgtacttcagtcctctgttgtatgcttttgctggtagcaattca |
189 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| || ||| ||||| || ||||||| ||||| || ||||||||||| |||||| |
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| T |
31035379 |
tctctctagtaagatgattcattcaagtttacatcattattttaaaaatttaagtgtgtacctcggtcctctattgtaggcatttgctggtagaaattca |
31035280 |
T |
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| Q |
190 |
tat |
192 |
Q |
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||| |
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| T |
31035279 |
tat |
31035277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 31056678 - 31056604
Alignment:
| Q |
64 |
tatatatagggataggtgtctcacatgctctctctagtaagatgattcattcaagtttccatcattattttaaaa |
138 |
Q |
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| T |
31056678 |
tatatacaggcataagtgtctcacatgttctctctgataagattattcatttaagtttccatcattattttaaaa |
31056604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 138
Target Start/End: Original strand, 31096469 - 31096543
Alignment:
| Q |
64 |
tatatatagggataggtgtctcacatgctctctctagtaagatgattcattcaagtttccatcattattttaaaa |
138 |
Q |
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||||||||| ||| || ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
31096469 |
tatatatagaaataagtatctcacatgttctctctacaaagatgattcattcaagattccatcattattttaaaa |
31096543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 64 - 138
Target Start/End: Original strand, 5181 - 5255
Alignment:
| Q |
64 |
tatatatagggataggtgtctcacatgctctctctagtaagatgattcattcaagtttccatcattattttaaaa |
138 |
Q |
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|||||||||| ||| |||||||| || |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5181 |
tatatataggcataagtgtctcatgtgttctctctacaaagatgattcattcaagtttccatcattattttaaaa |
5255 |
T |
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