View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_high_80 (Length: 214)
Name: NF5312_high_80
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_high_80 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 35053151 - 35053354
Alignment:
| Q |
1 |
agagaatggagccacgttttctagcaannnnnnnggtagctctttcatctccactctttgttcagtccttggtgcgtcattataattttagtgtaagtac |
100 |
Q |
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| T |
35053151 |
agagaatggagccacgttttctagcaatttttttggtagctctttcatctccactctttgttcagtccttggtgcgtcattacaattttagtgtaagtac |
35053250 |
T |
|
| Q |
101 |
acttcttatgctcaatttttcaggttcattaaaaatgtgacaataattaataagaaaaaaggttggcataaaagcattatcaaaatagtgcctcctatgc |
200 |
Q |
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| T |
35053251 |
acttcttatgctcaatttttcaggttcattaaaaatgtgacaataattagtaagaaaaaaggttggcataaaagcattatcaaaatagtgcttcctatgc |
35053350 |
T |
|
| Q |
201 |
tact |
204 |
Q |
| |
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|||| |
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| T |
35053351 |
tact |
35053354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 35069067 - 35069270
Alignment:
| Q |
1 |
agagaatggagccacgttttctagcaannnnnnnggtagctctttcatctccactctttgttcagtccttggtgcgtcattataattttagtgtaagtac |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35069067 |
agagaatggagccacgttttctagcaatttttttggtagctctttcatttccactctttgttcagtccttggtgcgtcattacaattttagtgtaagtac |
35069166 |
T |
|
| Q |
101 |
acttcttatgctcaatttttcaggttcatt-------aaaaatgtgacaataattaataagaaaaaaggttggcataaaagcattatcaaaatagtgcct |
193 |
Q |
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||||||||||||||||||||||| |||||| ||||| |||||| || ||||||||| |||| ||||| |||||||||||||||||||| ||| | |
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| T |
35069167 |
acttcttatgctcaatttttcagattcattttaagtgaaaaacgtgacattagttaataagagaaaaagttggaataaaagcattatcaaaataatgctt |
35069266 |
T |
|
| Q |
194 |
ccta |
197 |
Q |
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|||| |
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| T |
35069267 |
ccta |
35069270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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