View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_high_82 (Length: 213)
Name: NF5312_high_82
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_high_82 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 15930989 - 15930810
Alignment:
| Q |
17 |
atcaatgcttgtcctaactttctgcatgctactttgatcttgctcaatataattatgttaaattagtatgagaagtggttcgatactacaattaaatttt |
116 |
Q |
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| T |
15930989 |
atcaatgtttgtcctaactttctgcatgctactttgatcttgctcattataattatgttaaattagtatgagaaatggttcgatactacaattaaatttt |
15930890 |
T |
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| Q |
117 |
caccttcattagctatttctttacagttaaacaagtgttttccttcaacgatgcaggaaaagagaaacaggttaggtgaa |
196 |
Q |
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| T |
15930889 |
caccttcattagctgttactttacagttaaacaagtgttttccttcaacgatgcaggaaaagagaaacaggttaggtgaa |
15930810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 138 - 196
Target Start/End: Complemental strand, 14777918 - 14777860
Alignment:
| Q |
138 |
tacagttaaacaagtgttttccttcaacgatgcaggaaaagagaaacaggttaggtgaa |
196 |
Q |
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| T |
14777918 |
tacaattaaacaagtgttttcctccaatgatgcaagcaaagagaaacagattaggtgaa |
14777860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 134
Target Start/End: Original strand, 15011925 - 15012017
Alignment:
| Q |
42 |
atgctactttgatcttgctcaatataattatgttaaattagtatgagaagtggttcgatactacaattaaattttcaccttcattagctattt |
134 |
Q |
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| T |
15011925 |
atgctacttagatcttgctccttataattgtgttaaattagtatggaaagttgattattattacaatcaaattttcaaattcattagctattt |
15012017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 15025232 - 15025276
Alignment:
| Q |
42 |
atgctactttgatcttgctcaatataattatgttaaattagtatg |
86 |
Q |
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| T |
15025232 |
atgctactttgatcttgctctttataattgtgttaaattagtatg |
15025276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 34126545 - 34126598
Alignment:
| Q |
143 |
ttaaacaagtgttttccttcaacgatgcaggaaaagagaaacaggttaggtgaa |
196 |
Q |
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| T |
34126545 |
ttaaacaagtgttttcgtccaatgatgcaagcaaagagaaacagattaggtgaa |
34126598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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