View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_high_85 (Length: 204)
Name: NF5312_high_85
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_high_85 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 22878571 - 22878398
Alignment:
| Q |
18 |
aatgagccttaaatattaaaattgaacaacacagcataattataatcactgtcatagacaacgtcctacgttaccgaaaattgatcccaggacctccaac |
117 |
Q |
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| T |
22878571 |
aatgagccttaaatattaaaattgaacaacacatcataattataatcactgtcatagacaacgtcctacgttaccgaaaattgatcccaggacctccaac |
22878472 |
T |
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| Q |
118 |
tccttaacctttagttgaaaccagttgaggtactcaaccctcgaccaacaaatacagtgatgaaatttaaattt |
191 |
Q |
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| T |
22878471 |
tccttaacccttagttgaaaccagttgaggtactcaaccctcgaccaacaaatacagtgatgaaatttaaattt |
22878398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 52 - 191
Target Start/End: Complemental strand, 22812923 - 22812785
Alignment:
| Q |
52 |
cataattataatcactgtcatagacaacgtcctacgttaccgaaaattgatcccaggacctccaactccttaacctttagttgaaaccagttgaggtact |
151 |
Q |
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| T |
22812923 |
cataattataatcactgtcatggacaacgtc-taagttagcaaaaattgaaccgaggacctccaactccttaacccttagctgaaaccagttgaggtact |
22812825 |
T |
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| Q |
152 |
caaccctcgaccaacaaatacagtgatgaaatttaaattt |
191 |
Q |
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| T |
22812824 |
caaccctcgaccaacaaatacagtgataaaatttaaattt |
22812785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 22896313 - 22896162
Alignment:
| Q |
18 |
aatgagccttaaatattaaaattgaacaacacagcataattataatcactgtcatagacaacgtcctacgttaccgaaaattgatcccaggacctccaac |
117 |
Q |
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| T |
22896313 |
aatgagccttaaatattaaaattgaacaacacatcataattataatcactgtcatggacaatgt-cgacattaccaaaatttgaacagacgacctccaac |
22896215 |
T |
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| Q |
118 |
tccttaacctttagttgaaaccagttgaggtactcaaccctcgaccaacaaat |
170 |
Q |
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| T |
22896214 |
ttcttaacccttagctcaaaccaatcgaggtactcaaccctcgaccaacaaat |
22896162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 44184263 - 44184312
Alignment:
| Q |
108 |
gacctccaactccttaacctttagttgaaaccagttgaggtactcaaccc |
157 |
Q |
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| T |
44184263 |
gacctccaactcattaacccttagttcaaaccagttgagttactcaaccc |
44184312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 2097140 - 2097082
Alignment:
| Q |
98 |
ttgatcccaggacctccaactccttaacctttagttgaaaccagttgaggtactcaacc |
156 |
Q |
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| T |
2097140 |
ttgaacccaggacctccaactccttaacccttagctcaaactagttgagctacccaacc |
2097082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 44675628 - 44675590
Alignment:
| Q |
108 |
gacctccaactccttaacctttagttgaaaccagttgag |
146 |
Q |
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| T |
44675628 |
gacctccaactccttaacctttagctcaaaccagttgag |
44675590 |
T |
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