View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5312_low_1 (Length: 1645)

Name: NF5312_low_1
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5312_low_1
NF5312_low_1
[»] chr5 (14 HSPs)
chr5 (981-1465)||(11339290-11339772)
chr5 (1076-1574)||(43378810-43379298)
chr5 (169-483)||(11335599-11335917)
chr5 (656-828)||(11336209-11336381)
chr5 (487-645)||(11335995-11336153)
chr5 (12-91)||(11335151-11335230)
chr5 (723-828)||(43379448-43379553)
chr5 (1550-1618)||(11343582-11343650)
chr5 (192-285)||(24136585-24136679)
chr5 (25-91)||(11335202-11335269)
chr5 (22-91)||(11335120-11335192)
chr5 (24-57)||(11335312-11335345)
chr5 (723-828)||(43378572-43378677)
chr5 (39-91)||(11335289-11335341)
[»] chr6 (12 HSPs)
chr6 (1076-1626)||(13207583-13208120)
chr6 (192-269)||(21861811-21861888)
chr6 (192-267)||(9402981-9403056)
chr6 (34-85)||(22860895-22860946)
chr6 (192-269)||(13167196-13167273)
chr6 (789-828)||(13208225-13208264)
chr6 (768-826)||(3163534-3163592)
chr6 (669-711)||(10740746-10740788)
chr6 (36-85)||(18981357-18981407)
chr6 (25-59)||(22860737-22860771)
chr6 (24-73)||(22860868-22860918)
chr6 (723-828)||(13207346-13207451)
[»] chr2 (10 HSPs)
chr2 (24-73)||(29409358-29409407)
chr2 (25-73)||(38583917-38583965)
chr2 (775-822)||(3466658-3466705)
chr2 (234-281)||(32290392-32290441)
chr2 (656-721)||(8985740-8985805)
chr2 (24-73)||(8986315-8986364)
chr2 (34-84)||(8986342-8986394)
chr2 (24-73)||(8986463-8986512)
chr2 (24-61)||(38584023-38584060)
chr2 (775-828)||(39062863-39062916)
[»] chr4 (7 HSPs)
chr4 (231-269)||(16870260-16870298)
chr4 (38-86)||(16871166-16871216)
chr4 (25-59)||(16871155-16871189)
chr4 (656-721)||(16869676-16869741)
chr4 (24-73)||(16870846-16870895)
chr4 (34-84)||(16870873-16870925)
chr4 (24-73)||(16870994-16871043)
[»] chr7 (5 HSPs)
chr7 (24-61)||(26403160-26403197)
chr7 (775-828)||(35752377-35752430)
chr7 (34-84)||(46963711-46963763)
chr7 (24-73)||(46963741-46963790)
chr7 (656-721)||(46964298-46964363)
[»] chr3 (3 HSPs)
chr3 (204-269)||(50295310-50295375)
chr3 (28-73)||(42530833-42530879)
chr3 (24-58)||(50295873-50295907)
[»] chr8 (1 HSPs)
chr8 (737-803)||(3582072-3582138)


Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 981 - 1465
Target Start/End: Original strand, 11339290 - 11339772
Alignment:
Q  981 attggccattctgctcgacatcacctcacccaaatcactctaagtcaaatttttgtctccaccaccgcttcaaactgccaaagcgctgccactttatcat 1080  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  11339290 attggccattctgctcgacatcacctcacccaaatcactctaagtcaaatttt-gtctccaccaccgcttcaaactgccaaagcgctgccgctttatcat 11339388  T
Q  1081 tcatggttgtttcacaatggtgcttttatagctcccaaacctgaaaacgacttcaagtggtatttttatttttcagaacaaaatttgacagtgttaataa 1180  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11339389 tcatggttgtttcacaatggtgtttttatagctcccaaacctgaaaacaacttcaagtggtatttttatttttcagaacaaaatttgacagtattaataa 11339488  T
Q  1181 gtgataataatatctaagtcccttaaaacttttcctaattgaattatattcatctgtcctaagatgaatcttatnnnnnnnnnctatttttagatgaggt 1280  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||          | ||||||||||||||    
T  11339489 gtgataataatatgtaagttccttaaaacttttcctaattgaattatattcatctgtcctaagatgaatcttataaaaaaact-tttttttagatgaggt 11339587  T
Q  1281 tatgtttttgcagtctagtgagacatttataactgatttgtaaaacaatggtgcttcacggtggaatttcacttcaatccctcttgtgagttaattgata 1380  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11339588 tatgtttttgcagtccagtgagacatttataactgatttgtaaaacaatggtgtttcacggtggaatttcacttcaatccctcttgtgagttaattgata 11339687  T
Q  1381 attgattgtaccagatattgttacggtaaagcatatactatatgatttgttgtcatatatactttgacacaagcagtagtgacaa 1465  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11339688 attgattgtaccagatatggttacggtaaagcatatactatatgatttgttgtcatatatactttgacacaagcagtagtgacaa 11339772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 1076 - 1574
Target Start/End: Original strand, 43378810 - 43379298
Alignment:
Q  1076 atcattcatggttgtttcacaatggtgcttttatagctcccaaacctgaaaacgacttcaagtggtatttttatttttcagaacaaaatttgacagtgtt 1175  Q
    ||||||||||||||||| ||||||||| |||||||||||| |||||  ||||| ||||||||||||||||  ||||||| ||||||||||||| ||||||    
T  43378810 atcattcatggttgttttacaatggtgtttttatagctccaaaaccataaaacaacttcaagtggtattt--atttttctgaacaaaatttgatagtgtt 43378907  T
Q  1176 aataagtgataataatatctaagtcccttaaaacttttcctaattgaattatattcatctgtcctaagatgaatcttatnnnnnnnnnctattttt---- 1271  Q
    |||||||||||||| ||| ||||||||||||||||          |||||||||||||| || ||||||||||||||||            |||||        
T  43378908 aataagtgataatagtatgtaagtcccttaaaact----------gaattatattcatcggttctaagatgaatcttataaaaaaaaatgttttttttta 43378997  T
Q  1272 agatgaggttatgtttttgcagtctagtgagacatttataactgatttgtaaaacaatggtgcttcacggtggaatttcacttcaatccctcttgtgagt 1371  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  43378998 agatgaggttatgtttttgcagtcaagtgagacatttataactaatttgtaaaacaacggtgcttcacggtggaatttcacttcagtccctcttgtgagt 43379097  T
Q  1372 taattgataattgattgtaccagatattgttacggtaaagcatatactatatgatttgttgtcatatatactttgacacaagcagtagtgacaa--cttt 1469  Q
    |||||||||| ||||||||||| ||||||| ||||||||||  || |||||  |||||||| |  ||||||||||||||||||||||| |||||  ||||    
T  43379098 taattgataactgattgtaccatatattgtaacggtaaagc--atgctatacaatttgttgcc--atatactttgacacaagcagtagcgacaaagcttt 43379193  T
Q  1470 aacggttggaagcggcggcgactgcggtgatgataacgacatgtgatattgagggtgagttgggtgaggtaacgtggagtagaaggggaggatgctgcct 1569  Q
    | ||||| |||||||||| ||| |||| || |||||||||||||| ||||||||||||||||||  ||| |||||||||||||||||||||||| |||||    
T  43379194 accggtttgaagcggcggtgacagcggcgaagataacgacatgtgttattgagggtgagttgggcaaggcaacgtggagtagaaggggaggatgatgcct 43379293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 169 - 483
Target Start/End: Original strand, 11335599 - 11335917
Alignment:
Q  169 tgaagcaccaaaacgaaccga-ctaaacaaaccaaaacaagttgaacaaaagcaactagagtcagacagagacgaacaaccaattaaccaaacacaaaca 267  Q
    |||| |||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11335599 tgaaacaccaaaacgaaccaaactaaacaaaccaaaacaagttgaaccaaagcaactagagtcagacagagacgaacaaccaattaaccaaacacaaata 11335698  T
Q  268 cataaacacacgaagactnnnnnnnctcacaaacggattactagactcaagtaaataaaccnnnnnnnggagatcagcccaaacataaaactcaagcaaa 367  Q
    || |||||||||||||||       |||||||||||||||||||||||| |||||||||||       ||||||| ||||||||||||||||||||||||    
T  11335699 cagaaacacacgaagactaaaaaaactcacaaacggattactagactcacgtaaataaaccaaaaaaaggagatcggcccaaacataaaactcaagcaaa 11335798  T
Q  368 aagaaccaccaaccttgattaaattaaaagaataatgaa---aaggagaataatcggatgcaaatctgactccaaaatccacaaacaaaatatgattcct 464  Q
    |||||||||||||||||||||||||||||||| ||||||   ||| ||||||||||| ||||| ||||||||||||| ||||||||||||| | ||||||    
T  11335799 aagaaccaccaaccttgattaaattaaaagaacaatgaaaagaagaagaataatcggctgcaagtctgactccaaaacccacaaacaaaatctaattcct 11335898  T
Q  465 ctatatattcccaattatg 483  Q
    | |||||||||||||||||    
T  11335899 ccatatattcccaattatg 11335917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 145; E-Value: 1e-75
Query Start/End: Original strand, 656 - 828
Target Start/End: Original strand, 11336209 - 11336381
Alignment:
Q  656 gaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatatacgagttcatctttcttccattcaggaagcctcca 755  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  11336209 gaagcgacgagtaatttaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatacacgagttcatctttcttccatttaggaagcctcca 11336308  T
Q  756 tttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg 828  Q
    |||| |||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11336309 ttttccccggtccagcttttaggtgtgtgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg 11336381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 101; E-Value: 3e-49
Query Start/End: Original strand, 487 - 645
Target Start/End: Original strand, 11335995 - 11336153
Alignment:
Q  487 aatccaaatgtagccataaaagcaaacaacnnnnnnnggcaatttcaaatccaccaacatcagtgtttcaacaaagagtcaatcggagtcaaataannnn 586  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||        
T  11335995 aatccaaatgtagccataaaagcaaacaacacaaaaaggcaatttcaaatccaccaacaacattgtttcaacaaagagtcaatcggagtcaaataatttt 11336094  T
Q  587 nnnagcgacgaatgcacaataaccaacaaatacaatcagtcttcaatcaagataaagat 645  Q
       ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  11336095 tttagcgacgaatgcacaataaccaacaaatataatcagtcttcaatcaaaataaagat 11336153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 11335151 - 11335230
Alignment:
Q  12 atcatcaggggaggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaaagcaatcaatcaggagaa 91  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11335151 atcataaggggaggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaaagcaatcaatcaggagaa 11335230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 7e-19
Query Start/End: Original strand, 723 - 828
Target Start/End: Complemental strand, 43379553 - 43379448
Alignment:
Q  723 gagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 822  Q
    ||||||||||||  |||||| | |||| |||||||| ||||  ||||| | |||||||| ||||||||| |||| ||||||||||||||| |||||||||    
T  43379553 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtggcaaaaataaaagcaagggttgggattaaaa 43379454  T
Q  823 ggtttg 828  Q
    ||||||    
T  43379453 ggtttg 43379448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 3e-18
Query Start/End: Original strand, 1550 - 1618
Target Start/End: Original strand, 11343582 - 11343650
Alignment:
Q  1550 agaaggggaggatgctgcctctgtatggactataaggggcagctgcggcggcgccggagagaggaagag 1618  Q
    ||||||||||||||| ||||||||||||||| |||||||||| |||||||||| |||||||||| ||||    
T  11343582 agaaggggaggatgccgcctctgtatggactgtaaggggcagttgcggcggcgtcggagagagggagag 11343650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 285
Target Start/End: Complemental strand, 24136679 - 24136585
Alignment:
Q  192 aaacaaaccaaaacaagttgaacaaaagcaactagagtcagacagagacgaacaaccaattaaccaaacacaaacaca--taaacacacgaagact 285  Q
    |||| |||||| ||||| ||||| |||||||| | || |||||| |||| ||||||||||||||||||||||||||||   |||||||||||||||    
T  24136679 aaacgaaccaagacaagctgaaccaaagcaacca-agacagacatagacaaacaaccaattaaccaaacacaaacacaatgaaacacacgaagact 24136585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 11335202 - 11335269
Alignment:
Q  25 gagaagtgcaatgcaatcaatcagaagaatcaa-aaggtgagaagtgcaaagcaatcaatcaggagaa 91  Q
    ||||||||||| |||||||||||| |||||||| |||  ||||||||||||||||||||| |||||||    
T  11335202 gagaagtgcaaagcaatcaatcaggagaatcaataagaggagaagtgcaaagcaatcaataaggagaa 11335269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 11335120 - 11335192
Alignment:
Q  22 gaggagaagtgcaatgcaatcaatcagaagaatcaaaagg---tgagaagtgcaaagcaatcaatcaggagaa 91  Q
    |||||||||||||  |||||||||||||||||||| ||||    ||||||||||| |||||||||||| ||||    
T  11335120 gaggagaagtgcagggcaatcaatcagaagaatcataaggggaggagaagtgcaatgcaatcaatcagaagaa 11335192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 11335312 - 11335345
Alignment:
Q  24 ggagaagtgcaatgcaatcaatcagaagaatcaa 57  Q
    ||||||||||||||||||||||||||||||||||    
T  11335312 ggagaagtgcaatgcaatcaatcagaagaatcaa 11335345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 723 - 828
Target Start/End: Original strand, 43378572 - 43378677
Alignment:
Q  723 gagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 822  Q
    ||||||||||||  |||||| | |||| ||||||||  |||  || || | |||||||| ||||| ||| |||| |||||||||||||||  ||||||||    
T  43378572 gagttcatctttgctccatttatgaaggctccatttaccccattctagctcttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaa 43378671  T
Q  823 ggtttg 828  Q
    ||||||    
T  43378672 ggtttg 43378677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 11335289 - 11335341
Alignment:
Q  39 aatcaatcagaagaatcaaaaggtgagaagtgcaaagcaatcaatcaggagaa 91  Q
    ||||||||| |||||| |||||| ||||||||||| |||||||||||| ||||    
T  11335289 aatcaatcaaaagaatgaaaaggggagaagtgcaatgcaatcaatcagaagaa 11335341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 218; Significance: 1e-119; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 1076 - 1626
Target Start/End: Original strand, 13207583 - 13208120
Alignment:
Q  1076 atcattcatggttgtttcacaatggtgcttttatagctcccaaacctgaaaacgacttcaagtggtatttttatttttcagaacaaaatttgacagtgtt 1175  Q
    ||||||||||||||||| ||||||||| |||||||||||| |||||  ||||| ||||||||||||||||  ||||||| ||||||||||||| ||||||    
T  13207583 atcattcatggttgttttacaatggtgtttttatagctccaaaaccataaaacaacttcaagtggtattt--atttttctgaacaaaatttgatagtgtt 13207680  T
Q  1176 aataagtgataataatatctaagtcccttaaaacttttcctaattgaattatattcatctgtcctaagatgaatcttatnnnnnnnnnctattttt---- 1271  Q
    |||||||||||||| ||| ||||||||||||||||          ||||||||||||||||| ||||||||||||||||          | |||||        
T  13207681 aataagtgataatagtatgtaagtcccttaaaact----------gaattatattcatctgttctaagatgaatcttataaaaaaaattttttttttttt 13207770  T
Q  1272 -agatgaggttatgtttttgcagtctagtgagacatttataactgatttgtaaaacaatggtgcttcacggtggaatttcacttcaatccctcttgtgag 1370  Q
     |||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||| ||||||||| |||    
T  13207771 aagattaggttatgtttttgcagtcaagtgagacatttataactaatttgtaaaacaacggtgctttacggtggaatttcacttcagtccctcttgcgag 13207870  T
Q  1371 ttaattgataattgattgtaccagatattgttacggtaaagcatatactatatgatttgttgtcatatatactttgacacaagcagtagtgacaa--ctt 1468  Q
    ||||||||||| ||||||||||| ||||||| ||| ||||||  || |||||| ||||| || |  |||||||||||||||||||||||||||||  |||    
T  13207871 ttaattgataactgattgtaccatatattgtaacgataaagc--atgctatataatttgctgcc--atatactttgacacaagcagtagtgacaaagctt 13207966  T
Q  1469 taacggttggaagcggcggcgactgcggtgatgataacgacatgtgatattgagggtgagttgggtgaggtaacgtggagtagaaggggaggatgctgcc 1568  Q
    || ||||| ||||||| || ||| |||| || |||||| ||||||| ||||||||||||||||||  ||| |||||||||||||||||||||||||||||    
T  13207967 taccggtttgaagcggtggtgacagcggcgaagataacaacatgtgttattgagggtgagttgggcaaggcaacgtggagtagaaggggaggatgctgcc 13208066  T
Q  1569 tctgtatggactataaggggcagctgcggcggcgccggagagaggaagagggagagac 1626  Q
    ||  ||  ||| | ||||||| |  ||||||||||||  |||||| ||||||||||||    
T  13208067 tc--tagtgacgaaaaggggcggtggcggcggcgccg--gagagggagagggagagac 13208120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 192 - 269
Target Start/End: Complemental strand, 21861888 - 21861811
Alignment:
Q  192 aaacaaaccaaaacaagttgaacaaaagcaactagagtcagacagagacgaacaaccaattaaccaaacacaaacaca 269  Q
    |||| |||||| ||||| ||| | |||||||| |||| || ||| |||||||||||||||||||||||||||||||||    
T  21861888 aaacgaaccaagacaagctgagccaaagcaaccagagacatacatagacgaacaaccaattaaccaaacacaaacaca 21861811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 9403056 - 9402981
Alignment:
Q  192 aaacaaaccaaaacaagttgaacaaaagcaactagagtcagacagagacgaacaaccaattaaccaaacacaaaca 267  Q
    |||| |||||| ||||||||||| ||||||||  ||  || ||| ||| |||||||||||||||||||||||||||    
T  9403056 aaacgaaccaagacaagttgaaccaaagcaacccgaaacaaacaaagaggaacaaccaattaaccaaacacaaaca 9402981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 22860946 - 22860895
Alignment:
Q  34 aatgcaatcaatcagaagaatcaaaaggtgagaagtgcaaagcaatcaatca 85  Q
    ||||||||||||| |||||| ||||||| ||||||||||| |||||||||||    
T  22860946 aatgcaatcaatcggaagaaccaaaaggggagaagtgcaatgcaatcaatca 22860895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 269
Target Start/End: Complemental strand, 13167273 - 13167196
Alignment:
Q  192 aaacaaaccaaaacaagttgaacaaaagcaactagagtcagacagagacgaacaaccaattaaccaaacacaaacaca 269  Q
    |||| |||||| ||||| ||| | |||||||| |||| || ||| | ||||||||||||||||||||| |||||||||    
T  13167273 aaacgaaccaagacaagctgacccaaagcaaccagagacaaacataaacgaacaaccaattaaccaaatacaaacaca 13167196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 789 - 828
Target Start/End: Complemental strand, 13208264 - 13208225
Alignment:
Q  789 gtgacaaacataaaagcaagggttaggattaaaaggtttg 828  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  13208264 gtgacaaaaataaaagcaagggttgggattaaaaggtttg 13208225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 768 - 826
Target Start/End: Original strand, 3163534 - 3163592
Alignment:
Q  768 cagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtt 826  Q
    |||||| |||||||  |||||||| |||| |||||| ||||||||||||| ||||||||    
T  3163534 cagtttatagatgtgcgacatgtgtcaaaaataaaaccaagggttaggatcaaaaggtt 3163592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 669 - 711
Target Start/End: Complemental strand, 10740788 - 10740746
Alignment:
Q  669 attcaagaagaatcaaaccatgctcttgataccatgtaaacaa 711  Q
    ||||||| || |||||||||||||||||||||||||| |||||    
T  10740788 attcaaggaggatcaaaccatgctcttgataccatgttaacaa 10740746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 18981407 - 18981357
Alignment:
Q  36 tgcaatcaatcagaagaatcaaaaggtg-agaagtgcaaagcaatcaatca 85  Q
    |||||||||||||||||||||||||| | | |||||||| |||||||||||    
T  18981407 tgcaatcaatcagaagaatcaaaaggagaaaaagtgcaatgcaatcaatca 18981357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 22860771 - 22860737
Alignment:
Q  25 gagaagtgcaatgcaatcaatcagaagaatcaaaa 59  Q
    |||||||||||||||||||| ||||||||||||||    
T  22860771 gagaagtgcaatgcaatcaaacagaagaatcaaaa 22860737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 22860918 - 22860868
Alignment:
Q  24 ggagaagtgcaatgcaatcaatcagaagaatcaa-aaggtgagaagtgcaa 73  Q
    |||||||||||||||||||||||| ||||||||| | || |||||||||||    
T  22860918 ggagaagtgcaatgcaatcaatcaaaagaatcaatagggggagaagtgcaa 22860868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 723 - 828
Target Start/End: Original strand, 13207346 - 13207451
Alignment:
Q  723 gagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 822  Q
    ||||||||||||  |||||| | |||| || |||||  |||  ||||| | |||||||| ||||| ||| |||| |||||||||||||||  ||||||||    
T  13207346 gagttcatctttactccatttacgaaggctacatttaccccattccagctcttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaa 13207445  T
Q  823 ggtttg 828  Q
    | ||||    
T  13207446 gatttg 13207451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.00000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 29409358 - 29409407
Alignment:
Q  24 ggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaa 73  Q
    |||||||||||||||||||||||||||||||||| ||| |||| ||||||    
T  29409358 ggagaagtgcaatgcaatcaatcagaagaatcaacaggggagacgtgcaa 29409407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 38583917 - 38583965
Alignment:
Q  25 gagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaa 73  Q
    |||||||||||| ||||||||||||||||||||| || |||||||||||    
T  38583917 gagaagtgcaatacaatcaatcagaagaatcaaagggggagaagtgcaa 38583965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 775 - 822
Target Start/End: Original strand, 3466658 - 3466705
Alignment:
Q  775 tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 822  Q
    ||||||| |||||| ||||||| |||||| ||||||||||||||||||    
T  3466658 tagatgtgtgacatatgacaaaaataaaatcaagggttaggattaaaa 3466705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 281
Target Start/End: Complemental strand, 32290441 - 32290392
Alignment:
Q  234 cagagacgaacaaccaattaaccaaacacaaacac--ataaacacacgaa 281  Q
    ||||||||||||||||||||| ||| |||||||||  |||||||||||||    
T  32290441 cagagacgaacaaccaattaatcaagcacaaacacaaataaacacacgaa 32290392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 656 - 721
Target Start/End: Complemental strand, 8985805 - 8985740
Alignment:
Q  656 gaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatata 721  Q
    |||||||||| ||| ||||| ||  |||||||| |||||||||||||||| ||||| ||| |||||    
T  8985805 gaagcgacgactaaatcaaggagggtcaaaccacgctcttgataccatgttaacaatacagatata 8985740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 8986364 - 8986315
Alignment:
Q  24 ggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaa 73  Q
    |||||||| |||||||||||||| |||||| ||| ||| |||||||||||    
T  8986364 ggagaagtacaatgcaatcaatcggaagaaccaataggggagaagtgcaa 8986315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 8986394 - 8986342
Alignment:
Q  34 aatgcaatcaatcagaagaatcaaaag--gtgagaagtgcaaagcaatcaatc 84  Q
    |||||||||||||||||||||||||||  | ||||||| ||| ||||||||||    
T  8986394 aatgcaatcaatcagaagaatcaaaagatgggagaagtacaatgcaatcaatc 8986342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 8986512 - 8986463
Alignment:
Q  24 ggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaa 73  Q
    ||||||||||||||||||||||| |||||| ||| |||  ||||||||||    
T  8986512 ggagaagtgcaatgcaatcaatcggaagaaccaatagggtagaagtgcaa 8986463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 38584023 - 38584060
Alignment:
Q  24 ggagaagtgcaatgcaatcaatcagaagaatcaaaagg 61  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  38584023 ggagaagtgcaatgcaatcactcagaaaaatcaaaagg 38584060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 775 - 828
Target Start/End: Complemental strand, 39062916 - 39062863
Alignment:
Q  775 tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg 828  Q
    ||||||||||||||||| |||  |||||| ||| || |||||||||||||||||    
T  39062916 tagatgtatgacatgtggcaacaataaaatcaatggctaggattaaaaggtttg 39062863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 16870298 - 16870260
Alignment:
Q  231 agacagagacgaacaaccaattaaccaaacacaaacaca 269  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  16870298 agacatagacgaacaaccaattaaccaaacacaaacaca 16870260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 16871216 - 16871166
Alignment:
Q  38 caatcaatcagaagaatcaaaa--ggtgagaagtgcaaagcaatcaatcag 86  Q
    ||||||||||||||||||||||  || ||||||||||| ||||||||||||    
T  16871216 caatcaatcagaagaatcaaaaggggagagaagtgcaatgcaatcaatcag 16871166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 16871189 - 16871155
Alignment:
Q  25 gagaagtgcaatgcaatcaatcagaagaatcaaaa 59  Q
    ||||||||||||||||||||||||| |||||||||    
T  16871189 gagaagtgcaatgcaatcaatcagacgaatcaaaa 16871155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 656 - 721
Target Start/End: Complemental strand, 16869741 - 16869676
Alignment:
Q  656 gaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatata 721  Q
    |||||||||| ||| ||||| ||  |||||||| |||||||||||||||| ||||| ||| |||||    
T  16869741 gaagcgacgactaaatcaaggagggtcaaaccacgctcttgataccatgttaacaatacagatata 16869676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 16870895 - 16870846
Alignment:
Q  24 ggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaa 73  Q
    |||||||| |||||||||||||| |||||| ||| ||| |||||||||||    
T  16870895 ggagaagtacaatgcaatcaatcggaagaaccaacaggggagaagtgcaa 16870846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 16870925 - 16870873
Alignment:
Q  34 aatgcaatcaatcagaagaatcaaaag--gtgagaagtgcaaagcaatcaatc 84  Q
    |||||||||||||||||||||||||||  | ||||||| ||| ||||||||||    
T  16870925 aatgcaatcaatcagaagaatcaaaagatgggagaagtacaatgcaatcaatc 16870873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 16871043 - 16870994
Alignment:
Q  24 ggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaa 73  Q
    ||||||||||||||||||||||| |||||| ||| ||| || ||||||||    
T  16871043 ggagaagtgcaatgcaatcaatcggaagaaccaataggggaaaagtgcaa 16870994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 26403197 - 26403160
Alignment:
Q  24 ggagaagtgcaatgcaatcaatcagaagaatcaaaagg 61  Q
    |||||||||||||||||||||||| |||||||||||||    
T  26403197 ggagaagtgcaatgcaatcaatcaaaagaatcaaaagg 26403160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 775 - 828
Target Start/End: Original strand, 35752377 - 35752430
Alignment:
Q  775 tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg 828  Q
    ||||||||||||||||| |||| |||||| ||| ||||  ||||||||||||||    
T  35752377 tagatgtatgacatgtggcaaaaataaaatcaatggttgtgattaaaaggtttg 35752430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 46963711 - 46963763
Alignment:
Q  34 aatgcaatcaatcagaagaatcaaaag--gtgagaagtgcaaagcaatcaatc 84  Q
    |||||||||||||||||||||||||||  | ||||||| ||| ||||||||||    
T  46963711 aatgcaatcaatcagaagaatcaaaagatgggagaagtacaatgcaatcaatc 46963763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 46963741 - 46963790
Alignment:
Q  24 ggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaa 73  Q
    |||||||| |||||||||||||| |||||| ||| ||| |||||||||||    
T  46963741 ggagaagtacaatgcaatcaatcggaagaaccaataggggagaagtgcaa 46963790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 656 - 721
Target Start/End: Original strand, 46964298 - 46964363
Alignment:
Q  656 gaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatata 721  Q
    |||||||||| ||| ||||| ||  |||||||| |||||||||||||||| ||||| ||| |||||    
T  46964298 gaagcgacgactaaatcaaggagggtcaaaccacgctcttgataccatgttaacaatacagatata 46964363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 50295375 - 50295310
Alignment:
Q  204 acaagttgaacaaaagcaactagagtcagacagagacgaacaaccaattaaccaaacacaaacaca 269  Q
    ||||| ||||| |||||||| | || |||||| |||| ||||||||||||| ||||||||||||||    
T  50295375 acaagctgaaccaaagcaaccatagacagacatagacaaacaaccaattaatcaaacacaaacaca 50295310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 42530879 - 42530833
Alignment:
Q  28 aagtgcaatgcaatcaatcagaagaatcaaaaggtg-agaagtgcaa 73  Q
    ||||| |||||||||||||||||||||||||||| | ||||||||||    
T  42530879 aagtgaaatgcaatcaatcagaagaatcaaaaggggaagaagtgcaa 42530833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 58
Target Start/End: Complemental strand, 50295907 - 50295873
Alignment:
Q  24 ggagaagtgcaatgcaatcaatcagaagaatcaaa 58  Q
    |||||||||||||||||||||||| ||||||||||    
T  50295907 ggagaagtgcaatgcaatcaatcaaaagaatcaaa 50295873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 737 - 803
Target Start/End: Complemental strand, 3582138 - 3582072
Alignment:
Q  737 tccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaa 803  Q
    |||||| |||||||||| |||| |||  ||| | |||||||||||||||||||||| ||| ||||||    
T  3582138 tccatttaggaagcctctatttatccatgtctattttttagatgtatgacatgtgagaaaaataaaa 3582072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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