View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_low_10 (Length: 447)
Name: NF5312_low_10
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 21 - 434
Target Start/End: Complemental strand, 36728941 - 36728528
Alignment:
| Q |
21 |
accttcatttggaactagtggagtggtaaactccccagaaatgggtttgatatcaggcttgtcacctttattccaaatccaaagaccatgaagattaaat |
120 |
Q |
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| T |
36728941 |
accttcatttggaactagtggagtggtaaactccccagaaatggatttgatatcaggcttgtcacctttattccaaatccaaagaccatgaagattaaat |
36728842 |
T |
|
| Q |
121 |
ttgcaatcttccactccttctcctttcaattatgacaaatggtttcagaagatcgtgaggttcaatgtcacaagcattcgcgagagcttgtgcaaaggtg |
220 |
Q |
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| T |
36728841 |
ttgcaatattccactccttctcctttcaattatgacaaatggtttcagaagatcgtgaggttcgatgtcacaagcattcgcgagagcttgtgcaaaggtg |
36728742 |
T |
|
| Q |
221 |
agagtggctgtgcgattaccagtacgcggagcggatggcggcagagaggccaataaagaccatggcacaatgatagccatggttacttgcgctccaagaa |
320 |
Q |
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| T |
36728741 |
agagtggctgtgcggttaccagtacgtgcagcggatggcggcagagaggccaataaagaccatggaacaatgatagccatggttacttgcgctccaagaa |
36728642 |
T |
|
| Q |
321 |
aagaaataaaccatggtttcagaattcaaaggattatacatctgccaccattaatgaatcttaaacgtatatatgagaaaaactaaagatataatcgtat |
420 |
Q |
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| T |
36728641 |
aagaaataaaccatggtttcagaattcaaaggattatacatctgccaccattaatgaatctttaacgtatatatgagaaaaactaaagatataatcgtat |
36728542 |
T |
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| Q |
421 |
ctcatcacacaggt |
434 |
Q |
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| T |
36728541 |
ctcatcacacaggt |
36728528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 75 - 428
Target Start/End: Complemental strand, 36715262 - 36714914
Alignment:
| Q |
75 |
aggcttgtcacctttattccaaatccaaagaccatgaagattaaatttgcaatcttccactccttctcctttcaattatgacaaatggtttcagaagatc |
174 |
Q |
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|||| |||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36715262 |
aggcctgtcacctttattcaaaatccaacgaccatgaagaataaattttcaatcttccactcctt------tcaattatgacaaatggtttcagaagatc |
36715169 |
T |
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| Q |
175 |
gtgaggttcaatgtcacaagcattcgcgagagcttgtgcaaaggtgagagtggctgtgcgattaccagtacgcggagcggatggcggcagagaggccaat |
274 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| |||| | |||||| || ||| || || |||||||||||||||||||||||| |
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| T |
36715168 |
gtgaggttcaatgtcacaagcattcgcaagagcttgtgcaaaggtctgagtagttgtgcggttgccaataggcatagcggatggcggcagagaggccaaa |
36715069 |
T |
|
| Q |
275 |
aaagaccatggcacaatgatagccatggttacttgcgctccaagaaaagaaat-aaaccatggtttcagaattcaaaggattatacatctgccaccatta |
373 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||| ||| || ||| ||| || |
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| T |
36715068 |
aaagaccatggcacaatgttagccatggttacttgcgctccaagaaaatcaataaaaccatgatttcagaattcaaaggataatatatatgctaccgttt |
36714969 |
T |
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| Q |
374 |
atgaatcttaaacgtatatatgagaaaaactaaagatataatcgtatctcatcac |
428 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
36714968 |
atgagtcttaaacgtatatatgaggaaaactaaagatataatcttatctcatcac |
36714914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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