View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5312_low_11 (Length: 438)
Name: NF5312_low_11
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 16 - 419
Target Start/End: Original strand, 8855606 - 8856009
Alignment:
| Q |
16 |
cagagatgggtaccgatcaggtttgaaatccccgggatgatcaccatatgtccctcgaaagcagaagagaaaatgaaaataagtatcaatatgatcagta |
115 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||| |||||||||||||| |
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|
| T |
8855606 |
cagagatgggtactgatcaggtttgaaatccccgggatgatcaccatatgtccctcaaaagcagaagagaaaatgaaaacaggtaccaatatgatcagta |
8855705 |
T |
|
| Q |
116 |
ttggtggtagttaatcgaccacatcaagcaaaaaagagttaatcactcggatagttatacgacttgagtatttgaataagcaaaaaacaaaacctgcttg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || |
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| T |
8855706 |
ttggtggtagttaatcgaccacatcaagcaaaaaagagttaatcactcggatagttatacgacttgagtatttgaataaacaaaaaacaaaacttgc-tg |
8855804 |
T |
|
| Q |
216 |
taacagaaagcaacttcttatatatagtaataaacattttaagta-tgtactacatgaacttgagagtcaataaccatatgctaagaatatctcagacct |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8855805 |
taacagaaagcaacttcttatatatagtaataaacattttaagtacaatactacatgaacttgagagtcaataaccatatgctaagaatatctcagacct |
8855904 |
T |
|
| Q |
315 |
tataataatataaaaggattatccattcgacgcatataacaaccgtgctccaaaatcatgtgatgggagggataggaaaatctttaaattagttttcatt |
414 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8855905 |
tataataatataaaaggattatccattcgacgcatataacaaccgtgctccaaaatcatgtgatgggagggataggtaaatctttaaattagttttcatg |
8856004 |
T |
|
| Q |
415 |
aaagc |
419 |
Q |
| |
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||||| |
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|
| T |
8856005 |
aaagc |
8856009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 419
Target Start/End: Complemental strand, 14367553 - 14367150
Alignment:
| Q |
16 |
cagagatgggtaccgatcaggtttgaaatccccgggatgatcaccatatgtccctcgaaagcagaagagaaaatgaaaataagtatcaatatgatcagta |
115 |
Q |
| |
|
||||||||||||| | ||| |||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||| | ||| |||||||||||||| |
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|
| T |
14367553 |
cagagatgggtactgctcacgtttgaaatccccgggatgatcaccatatgtccctcaaaagaagaagggaaaatgaaacaaggtaccaatatgatcagta |
14367454 |
T |
|
| Q |
116 |
ttggtggtagttaatcgaccacatcaagcaaaaaagagttaatcactcggatagttatacgacttgagtatttgaataagcaaaaaacaaaacctgcttg |
215 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| || ||| |
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|
| T |
14367453 |
ttggtggtagtcaatcgtccacatcaagcaaaaaagagttaatcactcagatagttatacgacttgagtatttgaataaacaaaaaacaaaacttg-ttg |
14367355 |
T |
|
| Q |
216 |
taacagaaagcaacttcttatatatagtaataaacat-tttaagta-tgtactacatgaacttgagagtcaataaccatatgctaagaatatctcagacc |
313 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14367354 |
taacaggaagcaacttcttatatattgtaataaacatctttaagcacaatactacatgaacttgagagtcaataaccatatgctaagaatatctcagacc |
14367255 |
T |
|
| Q |
314 |
ttataataatataaaaggattatccattcgacgcatataacaaccgtgctccaaaatcatgtgatgggagggataggaaaatctttaaattagttttcat |
413 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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|
| T |
14367254 |
ttataaaaatat-aaaggattatccattcgacgcatataacaactgtgctccaaaatcatgtgatgggagggatagacaaatctttaaatttgttttcat |
14367156 |
T |
|
| Q |
414 |
taaagc |
419 |
Q |
| |
|
||||| |
|
|
| T |
14367155 |
gaaagc |
14367150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 23 - 322
Target Start/End: Complemental strand, 25556309 - 25556015
Alignment:
| Q |
23 |
gggtaccgatcaggtttgaaatccccgggatgatcaccatatgtccctcgaaagcagaagagaaaatgaaaataagtatcaatatgatcagtattggtgg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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|
| T |
25556309 |
gggtaccgatcaggtttgaaatccccgggatgatcaccatatgtccctcgaaagcagaagagaaaatgaaaacaagtcccaatatgatcagtattggtgg |
25556210 |
T |
|
| Q |
123 |
tagttaatcgaccacatcaagcaaaaaagagttaatcactcggatagttatacgac-ttgagtatttgaataagcaaaaaacaaaacctgcttgtaacag |
221 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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|
| T |
25556209 |
tagttaatcgaccacatcaagcaaaaacgagttaatcactctgatagttatacgacattgagtatttgaat-------aaacaaaacctgcttgtaacag |
25556117 |
T |
|
| Q |
222 |
aaagcaacttcttatatatagtaataaacattttaagta-tgtactacatgaacttgagagtcaataaccatatgctaagaatatctcagaccttataat |
320 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25556116 |
aaagcaacttcttatatgtagtaataaacattttaagtacaatcctacatgaacttgagagtcaataaccatatgctaagaatatctcagaccttataat |
25556017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 57 - 419
Target Start/End: Original strand, 19576033 - 19576395
Alignment:
| Q |
57 |
caccatatgtccctcgaaagcagaagagaaaatgaaaataagtatcaatatgatcagtattggtggtagttaatcgaccacatcaagcaaaaaagagtta |
156 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||| | ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
19576033 |
caccatatgtccctcaaaagaagaagagaaaatgaaacaaggtaccaatatgatcagtattggtggtagtcaatcgaccacatcaagcaaaaaagagtta |
19576132 |
T |
|
| Q |
157 |
atcactcggatagttatacgacttgagtatttgaataagcaaaaaacaaaacctgcttgtaacagaaagcaacttcttatatatagtaataaacat-ttt |
255 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||| ||||||||||||| || ||||||||| |||||||||||||||||||||||||||||| ||| |
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|
| T |
19576133 |
atcattcagatagttatacgacttgagtatttgaataaacaaaaaacaaaacttg-ttgtaacaggaagcaacttcttatatatagtaataaacatcttt |
19576231 |
T |
|
| Q |
256 |
aagta-tgtactacatgaacttgagagtcaataaccatatgctaagaatatctcagaccttataataatataaaaggattatccattcgacgcatataac |
354 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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|
| T |
19576232 |
aagcacaatactacatgaacttgagagtcaataaccatatgctaagaatatctcagaccttataaaaatat-aaaggattatccattcgacgcatataac |
19576330 |
T |
|
| Q |
355 |
aaccgtgctccaaaatcatgtgatgggagggataggaaaatctttaaattagttttcattaaagc |
419 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
19576331 |
aactgtgctccaaaatcatgtgatgggagggatagacaaatctttaaattagttttcatgaaagc |
19576395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 180; Significance: 5e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 126 - 406
Target Start/End: Complemental strand, 26383562 - 26383272
Alignment:
| Q |
126 |
ttaatcgaccacatcaagcaaaaaagagttaatcactcggatagttatacgacttgagtatttgaataagcaaaaaacaaaacctgcttgtaacagaaag |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||| ||||||||||||| |||| ||||||| ||| |
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|
| T |
26383562 |
ttaatcgaccacatcaagcaaaaaagagttaatgacttggatagttatacaacttgagtatttgaataaacaaaaaacaaaacttgct-gtaacaggaag |
26383464 |
T |
|
| Q |
226 |
caacttcttatatata-------gtaataaacattttaagtatg-tactacatgaacttgagagtcaataaccatatgctaagaatatctcagaccttat |
317 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
26383463 |
caacttcttatatataaatagtagtaataaacatttcaagtgcaatactacatgaacttgagactcaataaccatatgctaagaatatctcagaccgtat |
26383364 |
T |
|
| Q |
318 |
aataatataaaaggattatccattcgacgcatataacaaccgtgctccaaaatcatgtgatgg---gagggataggaaaatctttaaattag |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
26383363 |
aataatataaaaggattatccattcgacgcatataacaaccgtgctccaaaatcatgtgatgggaggagggatagacaaatctttaaattag |
26383272 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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