View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_low_14 (Length: 434)
Name: NF5312_low_14
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 393
Target Start/End: Complemental strand, 4748827 - 4748450
Alignment:
| Q |
17 |
tttagtacattacgacatgtttctggcgagcaaactatgatggttggatacccaaacaaatgtgtcctgtacatacctgtcctgccatatctgtatttta |
116 |
Q |
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| T |
4748827 |
tttagtacattacgacatgtctctggcgagcaaactatgacggttggatacccaaacaaatgtgtcctgtacatacctgtcctgccatatctgtatttta |
4748728 |
T |
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| Q |
117 |
taaaataaaaaccatccaaagttagtcacatttatgagcatccacgactatagatgtttttgcactatgttttgagtaaattttcttgagtagtatatgt |
216 |
Q |
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| T |
4748727 |
taaaataaaaaccatccaaagttagtcacatttatgagcatccacgactatagatgtttttgcactatgttttgagtaaattttcttgagtagtatatgt |
4748628 |
T |
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| Q |
217 |
tggaacattggtggaaatataaaaagtggtct--taagcagagtctattttgataatttgtgcctttgtctttggagaaattagatattaaaatgatatt |
314 |
Q |
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| T |
4748627 |
tggaacattggtggaaatataaaaagtggtcttataagcagagtcttttttgatattttgtgcctttgtctttggagaaattagatattaaaatgatatt |
4748528 |
T |
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| Q |
315 |
aacatcatatttgagtggtcgcagaatcgtaagtaaggttgtgatcaggggcagagccacctattgtccaggggattca |
393 |
Q |
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| T |
4748527 |
aatatcatatttgagtggtcgcagaatcgt-agtaaggttgtcatcaggggcggagccacctattgtccaggggattca |
4748450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 4756653 - 4756571
Alignment:
| Q |
26 |
ttacgacatgtttctggcgagcaaactatgatggttggatacccaaacaaatgtgtcctgtacatacctgtcctgccatatct |
108 |
Q |
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| T |
4756653 |
ttacgacatgtctctggtgtgcatactatgatgcttggactaccaaacaaatgtgttctatacatacctgtctttccatatct |
4756571 |
T |
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