View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5312_low_15 (Length: 433)
Name: NF5312_low_15
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 23 - 415
Target Start/End: Original strand, 38965103 - 38965495
Alignment:
| Q |
23 |
cataaatccatgcacaacaaatatcatatatagtatttgtctgatgatacatcctcagtttcacaatagtaacactctcatacttgtcaagnnnnnnnta |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
38965103 |
cataaatccatgcacaacaaatatcatatatagtatttgtctgatgatacatcctcagtttcacaatagtaacactctcatacttgtcaagaaaaaaata |
38965202 |
T |
|
| Q |
123 |
cagcagggtatcatttatcatatggaccaacaaaaatctatgatagggctttcaatcataccttttcatcaaacaatatcattcgaagacttccttcctg |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38965203 |
cagcagggtatcatttatcatatggaccaacaaaaatctatgatagggctttcaatcataccttttcatcaaacaatatcattcgaagacttccttcctg |
38965302 |
T |
|
| Q |
223 |
tgttgggttgggacagtcaggactaatcacattaaccttcaattgaaaatcaatccttccgccaacaatctctaaaatttgagttatcttgaaagatttt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38965303 |
tgttgggttgggacagtcaggactaatcacattaaccttcaattgaaaatcaatccttccgccaacaatctctaaaatttgagttatcttgaaagatttt |
38965402 |
T |
|
| Q |
323 |
ccaacaaaaaattgtgcttggatgaaccataaaagagtaacaaagaaaaataaggtatgaattatattgtatgaacatataacatgactgtta |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38965403 |
ccaacaaaaaattgtgcttggatgaaccataaaagagtaacaaagaaaaataaggtatgaattatattgtatgaacatataacatgactgtta |
38965495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University