View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_low_16 (Length: 429)
Name: NF5312_low_16
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_low_16 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 20 - 372
Target Start/End: Original strand, 49521433 - 49521785
Alignment:
| Q |
20 |
tctagaatatcctaacacagcatccagtgtcggagccactcttgtgtgagggggttcaagtgaatcccctggattcaaatctttacacctgtaaatctac |
119 |
Q |
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| T |
49521433 |
tctagaatttcctaacacagcatccagtgtcggagccactcttgtgtgagggggttcaagtgaatcccctggattcaaatctttacacatgtaaagatac |
49521532 |
T |
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| Q |
120 |
cttttcacatgttgaaccccctcaatatttctctttgaacctagtttttcactctctgcagtcaaaacatggtgcaacgttacnnnnnnnnnnnnnnnnc |
219 |
Q |
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| T |
49521533 |
cttttcacatgttgaaccccctcaatatttctctttgaacctggtttttcactctctgcagtcaaaacatggtgcaacgttactttgtttttgttttttc |
49521632 |
T |
|
| Q |
220 |
tgctatcataacatatattgttattatttttagaacaaaaatgaaagggatccctcatgtcatgttattaaaagtaatatatccaatagactagcacatt |
319 |
Q |
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| T |
49521633 |
tgctatcataacatatattgttactatttttagaacaaaaatgaaagggatccctcatgtcatgttattaaaagtaatatatccaatagactagcacatt |
49521732 |
T |
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| Q |
320 |
gtatctttggaaagttattacatatatgcccgatcttcgttaaagtttttata |
372 |
Q |
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| T |
49521733 |
gtatctttggaaagttattacatatatgctcgatcttcgttaaagattttata |
49521785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 54 - 410
Target Start/End: Complemental strand, 38870516 - 38870143
Alignment:
| Q |
54 |
gccactcttgtgtgagggggttcaagtgaatcccctggattcaaatctttacacctgtaaatctaccttttcacatgttgaaccccctcaatatttctct |
153 |
Q |
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| T |
38870516 |
gccactcttatgtgaggggattcaaatgaatcccctggatttaaatctttacacctttaaatctactttttcacatgttgaaccccctcaatatttccca |
38870417 |
T |
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| Q |
154 |
ttgaacctagtttttcactctctgcagtcaaaacatggtgcaacgttacnnnnnnnnnnnnnnnnctgctatcataacata-tattgttattatttttag |
252 |
Q |
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| T |
38870416 |
atgaacctgttttttcattctgtaccattaaaacgtggtgcaatgttactttgttttagttaattgtgctatcatgacatattattgttattattattag |
38870317 |
T |
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| Q |
253 |
aacaaaaatgaaagggatccctcatgtcatgtta------------ttaaaagtaatatatccaatagactagcac--------attgtatctttggaaa |
332 |
Q |
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| T |
38870316 |
aacaaaaatg--agggatcc--catgtcatgttaatttgttgcttgttaaaagtaatatatccaataggctggcacatcatttgattgtatcttcgaaaa |
38870221 |
T |
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| Q |
333 |
gttattacatatatgcccgatcttcgttaaagtttttatatttatttggtaagcatgctttaaaatttaaataataat |
410 |
Q |
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| T |
38870220 |
gttattacatatatacatgattttggttaaagattttatattaatttgataagcttgctttaaaatttaaataataat |
38870143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 422
Target Start/End: Original strand, 49521786 - 49521821
Alignment:
| Q |
387 |
atgctttaaaatttaaataataatctgcctttgctt |
422 |
Q |
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| T |
49521786 |
atgctttaaaatttaaataataatctgccgttgctt |
49521821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 64 - 202
Target Start/End: Complemental strand, 291425 - 291287
Alignment:
| Q |
64 |
tgtgagggggttcaagtgaatcccctggattcaaatctttacacctgtaaatctaccttttcacatgttgaaccccctcaatatttctctttgaacctag |
163 |
Q |
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| T |
291425 |
tgtgagggggttcaagtgaatcccctggatttcaatctttactcctataaatctactttttcacatgttgaaccccctcaatatttctctttgaacctgt |
291326 |
T |
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| Q |
164 |
tttttcactctctgcagtcaaaacatggtgcaacgttac |
202 |
Q |
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||| ||||||| | |||||||| |||||||| ||||| |
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| T |
291325 |
tttgtcactctgaaccgtcaaaacgtggtgcaatgttac |
291287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 223 - 410
Target Start/End: Complemental strand, 290426 - 290225
Alignment:
| Q |
223 |
tatcataacatat-attgttattatttttagaacaaaaatgaaagggatccctcatgtcatgtta------------ttaaaagtaatatatccaataga |
309 |
Q |
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| T |
290426 |
tatcataacatattattgttgttattattagaacagaaatgaaagggatcc--catgtcaggttaatttgttgcttgttaaatgcaatatatccaattga |
290329 |
T |
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| Q |
310 |
ctagca---cattgtatctttggaaagttattacatatatgcccgatcttcgttaaagtttttatatttatttggtaagcatgctttaaaatttaaataa |
406 |
Q |
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||| || |||||||||||||||||||||||||||||||| ||| || ||||||| |||||||||||| ||| ||||||| |||||||||||||||| |
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| T |
290328 |
ctatcatttgattgtatctttggaaagttattacatatatgcatgatttttgttaaagattttatatttatctggcaagcatggtttaaaatttaaataa |
290229 |
T |
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| Q |
407 |
taat |
410 |
Q |
| |
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|||| |
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| T |
290228 |
taat |
290225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 287 - 410
Target Start/End: Complemental strand, 3566686 - 3566564
Alignment:
| Q |
287 |
ttaaaagtaatatatccaatagactagcacat--------tgtatctttggaaagttattacatatatgcccgatcttcgttaaagtttttatatttatt |
378 |
Q |
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|||||||||||||||||| ||||||| ||||| ||||||||||||||||| ||||| |||||| |||||| ||||||||||||| |
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| T |
3566686 |
ttaaaagtaatatatccagtagactaacacatcatttgattgtatctttggaaagttgttacaaatatgcatgatctt---------ttttatatttatt |
3566596 |
T |
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| Q |
379 |
tggtaagcatgctttaaaatttaaataataat |
410 |
Q |
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| T |
3566595 |
tggtaagcatgctttaaaatttaaataataat |
3566564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 219 - 296
Target Start/End: Complemental strand, 3567261 - 3567185
Alignment:
| Q |
219 |
ctgctatcataacatat-attgttattatttttagaacaaaaatgaaagggatccctcatgtcatgttattaaaagtaa |
296 |
Q |
| |
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||||||| ||||||||| ||||||| |||| ||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
3567261 |
ctgctattataacatattattgttactattattagaacaaaaatgaaagggatcccccatgtca--ttattaaaagtaa |
3567185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 3567380 - 3567342
Alignment:
| Q |
44 |
cagtgtcggagccactcttgtgtgagggggttcaagtga |
82 |
Q |
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| T |
3567380 |
cagtggcgaagccactcttgtgtgagggggttcaagtga |
3567342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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