View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5312_low_19 (Length: 389)
Name: NF5312_low_19
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_low_19 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 36773212 - 36772857
Alignment:
| Q |
18 |
accggcatcagtcataatcagctgaattgcagttgcaattactaaaaaagtcaatacaatctttttatctatgattctatgaagcaagtgtgaattagga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36773212 |
accggcatcagtcataatcagctgaattgcagttgcaattactaaaaaagtcaatacaatctttttatctatgattctatgaagcaagtgtgaattagga |
36773113 |
T |
|
| Q |
118 |
catgaccttagtattaaacaataaagggttgtcacataggtcatgataaccaacagaattaaggacagttttcggtcaggtatcagagttatgaagagta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
36773112 |
catgaccttagtattaaacaataaagggttgtcacataggtcatgataagcaacagaattaaggacactttttggtcaggtatcagagttatgaagagta |
36773013 |
T |
|
| Q |
218 |
tgatccaaataaaaagtgtatagtatagccctatattcttcaagtttcttatgatgcgagatgccgcaacttcttgtgtcaagggaatgttaattgggca |
317 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
36773012 |
tcatccaaataaaaagtgtatagtatagccctatatgcttcaagtttcttatgatgcgagatgctgcaacttcttgtgtcaagggaaggttaattgggca |
36772913 |
T |
|
| Q |
318 |
atagaatttgaaattagcatatagtttttcatgtggtgattttggttcatatgtgt |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36772912 |
atagaatttgaaattagcatatagtttttcatgtggtgattttggttcatatgtgt |
36772857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 28 - 365
Target Start/End: Complemental strand, 36770958 - 36770621
Alignment:
| Q |
28 |
gtcataatcagctgaattgcagttgcaattactaaaaaagtcaatacaatctttttatctatgattctatgaagcaagtgtgaattaggacatgacctta |
127 |
Q |
| |
|
|||| |||||||||||||||||||||||| | || ||| |||| |||||| ||||||||||||| |||||||||| |||||||||||||| ||||| |
|
|
| T |
36770958 |
gtcaaaatcagctgaattgcagttgcaataaatagcaaactcaacacaatccttttatctatgatcctatgaagcacaactgaattaggacatgccctta |
36770859 |
T |
|
| Q |
128 |
gtattaaacaataaagggttgtcacataggtcatgataaccaacagaattaaggacagttttcggtcaggtatcagagttatgaagagtatgatccaaat |
227 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||||||||||||||| || |||| |||||| || ||||| || ||||||||||||||||||||||| |
|
|
| T |
36770858 |
atagtaaacaataaagggttgtcacataagtcatgataaccaacagaatcaacgacacttttcgttccggtatgagggttatgaagagtatgatccaaat |
36770759 |
T |
|
| Q |
228 |
aaaaagtgtatagtatagccctatattcttcaagtttcttatgatgcgagatgccgcaacttcttgtgtcaagggaatgttaattgggcaatagaatttg |
327 |
Q |
| |
|
||| ||||| ||||||| ||| | |||| ||||||||||||||||||||||| ||| | |||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
36770758 |
aaagagtgtgtagtataaccccaaattccctaagtttcttatgatgcgagatgctgcagcatcttgtgttaaggggatgttaattgggcaatagaatttg |
36770659 |
T |
|
| Q |
328 |
aaattagcatatagtttttcatgtggtgattttggttc |
365 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
36770658 |
agatcagcatatagtttttcatgtggtgattttggttc |
36770621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 373
Target Start/End: Original strand, 16749153 - 16749228
Alignment:
| Q |
298 |
aagggaatgttaattgggcaatagaatttgaaattagcatatagtttttcatgtggtgattttggttcatatgtgt |
373 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||| |||||| |||||| | |||||||||||||||||| |||| |
|
|
| T |
16749153 |
aagggaatgataattgggcaatatcatttgaaatgagcatacagttttaattttggtgattttggttcatacgtgt |
16749228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University