View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_low_23 (Length: 352)
Name: NF5312_low_23
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 12 - 334
Target Start/End: Complemental strand, 48487053 - 48486729
Alignment:
| Q |
12 |
agcatagggtaagctcttctcaacacacctttatgtaaaggtttgagttgttgttattgttgaaatctaatgaatttgtgatgggcacttggcaggacta |
111 |
Q |
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| T |
48487053 |
agcacagggtaagctcttctcaacacacctttatgtaaaggtttgagttgttgttattgttgaaatctaatgaatttgtgatgggcacttggcaggacta |
48486954 |
T |
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| Q |
112 |
tgcatgggcgaagcaggggatggtattccccttcttggaattcatggataggtttgtgtttgtg--tgtgattttggttgttgttctgcctgcaagaata |
209 |
Q |
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| T |
48486953 |
tgcatgggcgaagcaggggatggtattccccttcttggaattcatggataggtttgtgtttgtgtgtgtgattttggttgttgttctgcctgcaagaata |
48486854 |
T |
|
| Q |
210 |
tttggcttgtattcgctcatattaagaataatcttgttcagattccaggggcagacccgattgtacaagaccaaaggaagtgactttcacgaggcaatgg |
309 |
Q |
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| T |
48486853 |
tttggcttgtactcgctcatattaagaataatcttgttcagattccaggggcagacccgattgtacaagaccaaaggaagtgactttcacgaggcaatgg |
48486754 |
T |
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| Q |
310 |
aggaggcaatgttggcagataatgg |
334 |
Q |
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||||||||||||||||||||||||| |
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| T |
48486753 |
aggaggcaatgttggcagataatgg |
48486729 |
T |
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