View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5312_low_24 (Length: 350)

Name: NF5312_low_24
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5312_low_24
NF5312_low_24
[»] chr4 (18 HSPs)
chr4 (19-220)||(32354545-32354745)
chr4 (236-350)||(32354999-32355110)
chr4 (239-310)||(50041821-50041892)
chr4 (239-310)||(50049043-50049114)
chr4 (239-318)||(36498606-36498685)
chr4 (239-318)||(52198353-52198432)
chr4 (243-299)||(30643603-30643659)
chr4 (240-299)||(5052112-5052171)
chr4 (239-316)||(29544169-29544246)
chr4 (242-297)||(19473061-19473116)
chr4 (257-312)||(33913960-33914015)
chr4 (239-314)||(44015419-44015494)
chr4 (239-296)||(46079347-46079404)
chr4 (244-296)||(40202260-40202312)
chr4 (239-294)||(52673205-52673260)
chr4 (257-321)||(5787885-5787949)
chr4 (249-277)||(27841092-27841120)
chr4 (251-299)||(43589668-43589716)
[»] chr8 (18 HSPs)
chr8 (239-310)||(44132880-44132951)
chr8 (239-299)||(20896194-20896254)
chr8 (250-299)||(12964354-12964403)
chr8 (249-312)||(15682638-15682701)
chr8 (236-310)||(33681277-33681352)
chr8 (239-296)||(4834977-4835034)
chr8 (251-312)||(35910591-35910652)
chr8 (236-316)||(38646771-38646852)
chr8 (239-294)||(1898104-1898159)
chr8 (251-314)||(28008145-28008208)
chr8 (251-314)||(28065448-28065511)
chr8 (251-318)||(41951189-41951256)
chr8 (258-318)||(226372-226430)
chr8 (258-318)||(702785-702843)
chr8 (258-318)||(739995-740053)
chr8 (258-318)||(863890-863948)
chr8 (260-316)||(33938620-33938676)
chr8 (258-318)||(42127209-42127269)
[»] chr6 (16 HSPs)
chr6 (239-310)||(24226071-24226142)
chr6 (239-318)||(6793499-6793578)
chr6 (255-314)||(28067321-28067380)
chr6 (236-310)||(3037378-3037452)
chr6 (239-293)||(512773-512827)
chr6 (260-314)||(3840499-3840553)
chr6 (249-298)||(9976973-9977022)
chr6 (261-318)||(33906583-33906640)
chr6 (239-315)||(8585710-8585786)
chr6 (249-313)||(32267035-32267099)
chr6 (239-286)||(457686-457733)
chr6 (240-315)||(6139326-6139401)
chr6 (239-290)||(28729986-28730037)
chr6 (239-277)||(26847186-26847224)
chr6 (239-297)||(28963597-28963655)
chr6 (259-316)||(9928268-9928325)
[»] chr1 (18 HSPs)
chr1 (236-318)||(46325594-46325676)
chr1 (239-312)||(3950302-3950375)
chr1 (239-318)||(46325420-46325497)
chr1 (251-318)||(7537002-7537069)
chr1 (239-316)||(19431397-19431474)
chr1 (239-316)||(48914992-48915069)
chr1 (239-316)||(48915383-48915460)
chr1 (239-318)||(49315741-49315820)
chr1 (244-316)||(48915187-48915259)
chr1 (239-296)||(49177422-49177478)
chr1 (258-318)||(17368422-17368482)
chr1 (239-318)||(5398029-5398108)
chr1 (244-277)||(15106254-15106287)
chr1 (259-316)||(27032326-27032383)
chr1 (259-316)||(27907710-27907767)
chr1 (244-277)||(45781224-45781257)
chr1 (259-316)||(48843383-48843440)
chr1 (258-318)||(31108760-31108820)
[»] chr5 (13 HSPs)
chr5 (236-318)||(17250471-17250553)
chr5 (239-315)||(19824592-19824668)
chr5 (239-292)||(34928825-34928878)
chr5 (239-318)||(3622209-3622288)
chr5 (239-306)||(9956624-9956691)
chr5 (235-318)||(28975569-28975651)
chr5 (239-299)||(14281816-14281877)
chr5 (254-315)||(37484824-37484885)
chr5 (236-274)||(1309075-1309113)
chr5 (243-277)||(18623597-18623631)
chr5 (239-312)||(33922869-33922942)
chr5 (239-299)||(33953152-33953212)
chr5 (260-296)||(37480309-37480345)
[»] chr2 (13 HSPs)
chr2 (249-318)||(1208621-1208690)
chr2 (239-316)||(23395940-23396017)
chr2 (239-315)||(32832600-32832676)
chr2 (239-318)||(28640147-28640226)
chr2 (243-318)||(21835991-21836066)
chr2 (240-299)||(40204735-40204794)
chr2 (239-296)||(41069680-41069737)
chr2 (240-316)||(11226153-11226229)
chr2 (239-286)||(6752081-6752128)
chr2 (239-294)||(39729015-39729070)
chr2 (257-299)||(8209317-8209359)
chr2 (259-316)||(3496805-3496862)
chr2 (239-288)||(38529887-38529936)
[»] chr3 (10 HSPs)
chr3 (239-316)||(10688615-10688692)
chr3 (259-316)||(39972999-39973056)
chr3 (249-310)||(42681853-42681914)
chr3 (239-291)||(34305819-34305871)
chr3 (258-318)||(52404698-52404758)
chr3 (259-316)||(4037148-4037205)
chr3 (259-316)||(11233513-11233570)
chr3 (259-316)||(49279496-49279553)
chr3 (236-299)||(7654578-7654642)
chr3 (256-300)||(20345074-20345118)
[»] chr7 (15 HSPs)
chr7 (258-318)||(42691095-42691155)
chr7 (251-317)||(27311793-27311859)
chr7 (251-314)||(36436045-36436108)
chr7 (257-316)||(38701532-38701591)
chr7 (239-277)||(33957488-33957526)
chr7 (242-315)||(37685200-37685271)
chr7 (249-299)||(40591039-40591089)
chr7 (236-286)||(43279245-43279295)
chr7 (239-316)||(2628443-2628520)
chr7 (259-316)||(16876743-16876800)
chr7 (259-316)||(18867954-18868011)
chr7 (259-316)||(23185929-23185986)
chr7 (259-316)||(46425344-46425401)
chr7 (254-286)||(19699895-19699927)
chr7 (239-299)||(32204766-32204826)
[»] scaffold0008 (1 HSPs)
scaffold0008 (245-314)||(263754-263823)
[»] scaffold0085 (1 HSPs)
scaffold0085 (242-300)||(31594-31652)
[»] scaffold0176 (1 HSPs)
scaffold0176 (260-296)||(15118-15154)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 5e-78; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 32354545 - 32354745
Alignment:
Q  19 aatatgccaaagaagatgttgtttcttgctcctgttttcatttcttttctctcatatatacttgttgttgtatatgttagtgcctcaaattaatcaagtt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32354545 aatatgccaaagaagatgttgtttcttgctcctgttttcatttcttttctctcatatatacttgttgttgtatatgttagtgcctcaaattaatcaagtt 32354644  T
Q  119 aatgaaatgttattgtaaatgttaattatatactcttaacctcnnnnnnnnactatcgctttagcagnnnnnnncttgtttttatttatttatcttttaa 218  Q
    |||||||||||||||||||||||||||||||||||||| ||||        ||||||||||||||||       ||||||||||||||||||||||||||    
T  32354645 aatgaaatgttattgtaaatgttaattatatactcttaccctcttttttttactatcgctttagcag-aaaaaacttgtttttatttatttatcttttaa 32354743  T
Q  219 tt 220  Q
    ||    
T  32354744 tt 32354745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 236 - 350
Target Start/End: Original strand, 32354999 - 32355110
Alignment:
Q  236 tttgatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatagagaaaacaaaagcaaatgag 335  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  32354999 tttgatgagagataatgatagatg---gattaaaataaattactttgatgaaagagaatgattggctaggcgagagatagaaaaaacaaaagcaaatgag 32355095  T
Q  336 tttaatcattgttgt 350  Q
    |||||||||||||||    
T  32355096 tttaatcattgttgt 32355110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 50041821 - 50041892
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagaga 310  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||| || ||||||    
T  50041821 gatgagagataatgatagatgaatgattaaaataaattattttgatgagagagaattattggttaagagaga 50041892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 50049043 - 50049114
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagaga 310  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||| || ||||||    
T  50049043 gatgagagataatgatagatgaatgattaaaataaattattttgatgagagagaattattggttaagagaga 50049114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 318
Target Start/End: Original strand, 36498606 - 36498685
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatagaga 318  Q
    |||||||||  ||||||||||| |||||||||||||||| |||||||  ||||||| ||||| ||| |||||||||||||    
T  36498606 gatgagagaggatgatagatgagtgattaaaataaattattttgatgtgagagaattattggttagaagagagatagaga 36498685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 318
Target Start/End: Complemental strand, 52198432 - 52198353
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatagaga 318  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||| ||| ||| ||||| ||| |  ||||||||||    
T  52198432 gatgagagataatgatagataaatgattaaaataaattattttgatgagagataattattggttagaatcgagatagaga 52198353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 30643603 - 30643659
Alignment:
Q  243 agagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattg 299  Q
    |||||||||||| |||||||||||||||||||||| || ||||| ||||||||||||    
T  30643603 agagataatgatggatgaatgattaaaataaattatttagatgagagagaatgattg 30643659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 299
Target Start/End: Complemental strand, 5052171 - 5052112
Alignment:
Q  240 atgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattg 299  Q
    |||||||| ||||||| || |||||||||||||||||| |||||||| ||||||||||||    
T  5052171 atgagagagaatgataaataaatgattaaaataaattattttgatgagagagaatgattg 5052112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 316
Target Start/End: Original strand, 29544169 - 29544246
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagataga 316  Q
    ||||||||| ||||||| ||||||||||||||||||||| || ||||| ||||||||| | | ||  |||||||||||    
T  29544169 gatgagagaaaatgataaatgaatgattaaaataaattatttagatgatagagaatgagttgttaatagagagataga 29544246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 297
Target Start/End: Original strand, 19473061 - 19473116
Alignment:
Q  242 gagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgat 297  Q
    |||||| ||||||| ||||||||||||||||||||| || ||||||| ||||||||    
T  19473061 gagagaaaatgatacatgaatgattaaaataaattatttagatgaaaaagaatgat 19473116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 33914015 - 33913960
Alignment:
Q  257 atgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagaga 312  Q
    ||||||||||||||||||| | |||||||| ||||||| ||||| |||||||||||    
T  33914015 atgaatgattaaaataaatcattttgatgagagagaattattggttaggagagaga 33913960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 314
Target Start/End: Original strand, 44015419 - 44015494
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagata 314  Q
    ||||||| | ||||||||||||||||||||||||||||| || ||||| ||| || |||||  || ||||||||||    
T  44015419 gatgagaaagaatgatagatgaatgattaaaataaattatttagatgagagataaagattgattaagagagagata 44015494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 46079347 - 46079404
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatga 296  Q
    ||||||||| ||||||  ||||||||||||||||||||| || ||||| |||||||||    
T  46079347 gatgagagagaatgatcaatgaatgattaaaataaattatttagatgagagagaatga 46079404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 40202260 - 40202312
Alignment:
Q  244 gagataatgatagatgaatgattaaaataaattactttgatgaaagagaatga 296  Q
    |||||||||||  |||||| |||||||||||||| || |||||||||||||||    
T  40202260 gagataatgatgaatgaattattaaaataaattatttagatgaaagagaatga 40202312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 294
Target Start/End: Original strand, 52673205 - 52673260
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaat 294  Q
    ||||||||| ||||||  |||||| |||||||||||||| |||||||| |||||||    
T  52673205 gatgagagagaatgatgaatgaataattaaaataaattattttgatgagagagaat 52673260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 5787949 - 5787885
Alignment:
Q  257 atgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatagagaaaa 321  Q
    |||||| |||||||||||||| |||||||  | | ||||||||| ||| ||||||| ||||||||    
T  5787949 atgaattattaaaataaattattttgatgtgataaaatgattggttagtagagagaaagagaaaa 5787885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 27841120 - 27841092
Alignment:
Q  249 aatgatagatgaatgattaaaataaatta 277  Q
    |||||||||||||||||||||||||||||    
T  27841120 aatgatagatgaatgattaaaataaatta 27841092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 43589716 - 43589668
Alignment:
Q  251 tgatagatgaatgattaaaataaattactttgatgaaagagaatgattg 299  Q
    ||||| || |||||||||| | |||||||||||||| ||||||||||||    
T  43589716 tgatacataaatgattaaactgaattactttgatgagagagaatgattg 43589668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 44132880 - 44132951
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagaga 310  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||| || ||||||    
T  44132880 gatgagagataatgatagatgaatgattaaaataaattattttgatgagagagaattattggttaagagaga 44132951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 20896194 - 20896254
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattg 299  Q
    ||||||||||||||||| ||||||||||||||||||||| || ||||| ||||||||||||    
T  20896194 gatgagagataatgatatatgaatgattaaaataaattatttagatgagagagaatgattg 20896254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 250 - 299
Target Start/End: Complemental strand, 12964403 - 12964354
Alignment:
Q  250 atgatagatgaatgattaaaataaattactttgatgaaagagaatgattg 299  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  12964403 atgatatatgaatgattaaaataaattattttgatgaaagagaatgattg 12964354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 312
Target Start/End: Original strand, 15682638 - 15682701
Alignment:
Q  249 aatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagaga 312  Q
    ||||||| |||||||| |||||||| ||| |||||||||| |||||||| || |||||||||||    
T  15682638 aatgatatatgaatgactaaaataagttattttgatgaaaaagaatgatcggttaggagagaga 15682701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 310
Target Start/End: Original strand, 33681277 - 33681352
Alignment:
Q  236 tttgatgagagataatgatagatgaatgattaaaataaatta-ctttgatgaaagagaatgattggctaggagaga 310  Q
    ||||||| |||| |||||||||| ||||||||||||||||||  ||| |||| |||| |||||||| |||||||||    
T  33681277 tttgatgtgagagaatgatagataaatgattaaaataaattattttttatgagagagcatgattggttaggagaga 33681352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 4834977 - 4835034
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatga 296  Q
    ||||||||| ||||||  ||||||||||||||||||||| || | |||||||||||||    
T  4834977 gatgagagagaatgatgaatgaatgattaaaataaattatttaggtgaaagagaatga 4835034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 312
Target Start/End: Complemental strand, 35910652 - 35910591
Alignment:
Q  251 tgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagaga 312  Q
    ||||| ||||||||||||||||||| | |||||||| || |||| ||||| |||||||||||    
T  35910652 tgataaatgaatgattaaaataaatcattttgatgagagggaattattggttaggagagaga 35910591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 316
Target Start/End: Complemental strand, 38646852 - 38646771
Alignment:
Q  236 tttgatgagagataatgatagatgaatgattaaaataaatt-actttgatgaaagagaatgattggctaggagagagataga 316  Q
    |||||| |||||||||| |  |||||||||||||||||||| | |||||||||||||||| | ||| || |||| |||||||    
T  38646852 tttgataagagataatgctctatgaatgattaaaataaattaattttgatgaaagagaataactggttacgagaaagataga 38646771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 294
Target Start/End: Original strand, 1898104 - 1898159
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaat 294  Q
    ||||||||| ||||||| || | |||||||||||||||| |||||| |||||||||    
T  1898104 gatgagagagaatgatatataactgattaaaataaattattttgataaaagagaat 1898159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 314
Target Start/End: Complemental strand, 28008208 - 28008145
Alignment:
Q  251 tgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagata 314  Q
    ||||| ||| ||||||||||||| ||| |||||||||||| ||||||||  ||| |||||||||    
T  28008208 tgataaatggatgattaaaataacttattttgatgaaagataatgattgattagaagagagata 28008145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 314
Target Start/End: Complemental strand, 28065511 - 28065448
Alignment:
Q  251 tgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagata 314  Q
    ||||| ||| ||||||||||||| ||| |||||||||||| ||||||||  ||| |||||||||    
T  28065511 tgataaatggatgattaaaataacttattttgatgaaagataatgattgattagaagagagata 28065448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 318
Target Start/End: Complemental strand, 41951256 - 41951189
Alignment:
Q  251 tgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatagaga 318  Q
    ||||| |||||||| |||| |||||||  ||||||| ||||||| ||||  |||||||||||||||||    
T  41951256 tgataaatgaatgagtaaattaaattatcttgatgagagagaattattgattaggagagagatagaga 41951189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 318
Target Start/End: Original strand, 226372 - 226430
Alignment:
Q  258 tgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatagaga 318  Q
    ||||||||||||||||||||  ||||||  ||||||| ||| | |||||||||||||||||    
T  226372 tgaatgattaaaataaattatgttgatg--agagaattattagttaggagagagatagaga 226430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 318
Target Start/End: Original strand, 702785 - 702843
Alignment:
Q  258 tgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatagaga 318  Q
    ||||||||||||||||||||  ||||||  ||||||| ||| | |||||||||||||||||    
T  702785 tgaatgattaaaataaattatgttgatg--agagaattattagttaggagagagatagaga 702843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 318
Target Start/End: Original strand, 739995 - 740053
Alignment:
Q  258 tgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatagaga 318  Q
    ||||||||||||||||||||  ||||||  ||||||| ||| | |||||||||||||||||    
T  739995 tgaatgattaaaataaattatgttgatg--agagaattattagttaggagagagatagaga 740053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 318
Target Start/End: Original strand, 863890 - 863948
Alignment:
Q  258 tgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatagaga 318  Q
    ||||||||||||||||||||  ||||||  ||||||| ||| | |||||||||||||||||    
T  863890 tgaatgattaaaataaattatgttgatg--agagaattattagttaggagagagatagaga 863948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 316
Target Start/End: Original strand, 33938620 - 33938676
Alignment:
Q  260 aatgattaaaataaattactttgatgaaagagaatgattggctaggagagagataga 316  Q
    |||||||||||||||||| || ||||| ||||||||| | | || ||||||||||||    
T  33938620 aatgattaaaataaattatttagatgagagagaatgaattgttaagagagagataga 33938676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 318
Target Start/End: Original strand, 42127209 - 42127269
Alignment:
Q  258 tgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatagaga 318  Q
    |||||||||||||||||||| |||||||| | | ||| ||||| |||||| |||| |||||    
T  42127209 tgaatgattaaaataaattattttgatgagaaataattattggttaggagggagagagaga 42127269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 239 - 310
Target Start/End: Complemental strand, 24226142 - 24226071
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagaga 310  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||| ||||| |||||||||    
T  24226142 gatgagagaaaatgatagatgaatgattaaaataaattattttgatgacagagaattattggttaggagaga 24226071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 318
Target Start/End: Complemental strand, 6793578 - 6793499
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatagaga 318  Q
    ||||||||| || ||||||||| |||||||||||||||| |||||||| ||| ||| ||||| ||||| |||||||||||    
T  6793578 gatgagagagaacgatagatgagtgattaaaataaattattttgatgagagataattattggttaggatagagatagaga 6793499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 28067380 - 28067321
Alignment:
Q  255 agatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagata 314  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||| ||| |||||||||    
T  28067380 agatgaatgattaaaataaattattttgatgagagagaatgattggttagaagagagata 28067321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 310
Target Start/End: Original strand, 3037378 - 3037452
Alignment:
Q  236 tttgatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagaga 310  Q
    |||||||||||| |||| | |||||||||||||||||||||  || ||||||||||||||| ||| || ||||||    
T  3037378 tttgatgagagaaaatgttggatgaatgattaaaataaattttttagatgaaagagaatgaatggttaagagaga 3037452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 512827 - 512773
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaa 293  Q
    ||||||||| ||| |||||||| |||||||||||||||| |||||||| ||||||    
T  512827 gatgagagagaataatagatgagtgattaaaataaattattttgatgagagagaa 512773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 314
Target Start/End: Complemental strand, 3840553 - 3840499
Alignment:
Q  260 aatgattaaaataaattactttgatgaaagagaatgattggctaggagagagata 314  Q
    |||||| ||||||||||| ||||||||||| ||| ||||||||||| ||||||||    
T  3840553 aatgataaaaataaattattttgatgaaagggaaagattggctaggggagagata 3840499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 9976973 - 9977022
Alignment:
Q  249 aatgatagatgaatgattaaaataaattactttgatgaaagagaatgatt 298  Q
    ||||||||||||||||||||||||||||| |||||| | |||| ||||||    
T  9976973 aatgatagatgaatgattaaaataaattattttgattagagaggatgatt 9977022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 318
Target Start/End: Original strand, 33906583 - 33906640
Alignment:
Q  261 atgattaaaataaattactttgatgaaagagaatgattggctaggagagagatagaga 318  Q
    ||||||||||||||| | |||||||||||||||| ||| | ||| |||||||||||||    
T  33906583 atgattaaaataaatgattttgatgaaagagaattattcgttagaagagagatagaga 33906640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 8585786 - 8585710
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatag 315  Q
    ||||| ||| |||||| |||||||||||||||||||| | || ||||||||||| |||| |  || |||||||||||    
T  8585786 gatgaaagagaatgatggatgaatgattaaaataaatgatttagatgaaagagagtgatcgattaagagagagatag 8585710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 32267035 - 32267099
Alignment:
Q  249 aatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagat 313  Q
    |||||||||| |||||||||||||||||| | ||||| |||||||| ||||| ||| | ||||||    
T  32267035 aatgatagattaatgattaaaataaattattctgatggaagagaattattggttagaaaagagat 32267099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 457733 - 457686
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatga 286  Q
    ||||||||| |||||| |||||||||||||||||||||| || |||||    
T  457733 gatgagagagaatgatggatgaatgattaaaataaattatttagatga 457686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 315
Target Start/End: Complemental strand, 6139401 - 6139326
Alignment:
Q  240 atgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatag 315  Q
    |||||||| |||| ||||  |||||||||||||||||| || ||||| ||||||||| ||| ||  ||||||||||    
T  6139401 atgagagagaatgttagacaaatgattaaaataaattatttagatgagagagaatgaatggttaaaagagagatag 6139326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 28729986 - 28730037
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaaga 290  Q
    ||||||||| |||||||||| | || ||||||||||||| ||||||||||||    
T  28729986 gatgagagagaatgatagatcagtgcttaaaataaattattttgatgaaaga 28730037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 26847224 - 26847186
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaatta 277  Q
    ||||||||| |||||||||||||||| ||||||||||||    
T  26847224 gatgagagagaatgatagatgaatgagtaaaataaatta 26847186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 297
Target Start/End: Original strand, 28963597 - 28963655
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgat 297  Q
    ||||||||| |||||   ||||||||||||||||| ||| |||||||| ||||||||||    
T  28963597 gatgagagagaatgaagaatgaatgattaaaataacttattttgatgagagagaatgat 28963655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 316
Target Start/End: Complemental strand, 9928325 - 9928268
Alignment:
Q  259 gaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagataga 316  Q
    ||||||||||||||||||| || ||||| ||||||||| | | || ||||||||||||    
T  9928325 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagataga 9928268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 236 - 318
Target Start/End: Original strand, 46325594 - 46325676
Alignment:
Q  236 tttgatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatagaga 318  Q
    |||||||||||| ||||||||||||||||||||||||| ||| |||||||| ||||||||||||  || ||||||| ||||||    
T  46325594 tttgatgagagagaatgatagatgaatgattaaaataagttattttgatgagagagaatgattgattatgagagagttagaga 46325676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 3950302 - 3950375
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagaga 312  Q
    ||||||||| |||||| |||||||||||||||||||||| |||||||||||||||| ||||  || ||||||||    
T  3950302 gatgagagagaatgatcgatgaatgattaaaataaattattttgatgaaagagaataattgattaagagagaga 3950375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 318
Target Start/End: Complemental strand, 46325497 - 46325420
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatagaga 318  Q
    ||||||||  ||||||||||||||||||||||||||||| |||||||  ||||||||||||  || ||||||||||||||    
T  46325497 gatgagagggaatgatagatgaatgattaaaataaattattttgatg--agagaatgattgattatgagagagatagaga 46325420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 251 - 318
Target Start/End: Original strand, 7537002 - 7537069
Alignment:
Q  251 tgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatagaga 318  Q
    ||||| || |||||||||||||||||| |||||| ||||||| ||||||| |||||||||||||||||    
T  7537002 tgatatataaatgattaaaataaattattttgataaaagagagtgattggttaggagagagatagaga 7537069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 239 - 316
Target Start/End: Original strand, 19431397 - 19431474
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagataga 316  Q
    ||||||| | |||||| |||||||||||||||||||||| || ||||| ||||||||||||| || |||||| |||||    
T  19431397 gatgagacagaatgatggatgaatgattaaaataaattatttagatgagagagaatgattggttaagagagatataga 19431474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 239 - 316
Target Start/End: Original strand, 48914992 - 48915069
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagataga 316  Q
    ||||||||| ||||||  ||||||||||||||||||||| |||||||| ||||||||| | | || ||||||||||||    
T  48914992 gatgagagagaatgatgaatgaatgattaaaataaattattttgatgagagagaatgagttgttaagagagagataga 48915069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 239 - 316
Target Start/End: Original strand, 48915383 - 48915460
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagataga 316  Q
    ||||||||| ||||||  ||||||||||||||||||||| |||||||| ||||||||| | | || ||||||||||||    
T  48915383 gatgagagagaatgatgaatgaatgattaaaataaattattttgatgagagagaatgagttgttaagagagagataga 48915460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 318
Target Start/End: Original strand, 49315741 - 49315820
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatagaga 318  Q
    ||||||||| |||| ||||||| |||||||||||||||| |||||||||| | ||| ||||  || ||||||||||||||    
T  49315741 gatgagagagaatggtagatgagtgattaaaataaattattttgatgaaatataattattgattatgagagagatagaga 49315820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 244 - 316
Target Start/End: Original strand, 48915187 - 48915259
Alignment:
Q  244 gagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagataga 316  Q
    |||| ||||||  ||||||||||||||||||||| |||||||| ||||||||| | | || ||||||||||||    
T  48915187 gagagaatgatgaatgaatgattaaaataaattattttgatgagagagaatgagttgttaagagagagataga 48915259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 296
Target Start/End: Complemental strand, 49177478 - 49177422
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatga 296  Q
    ||||||||| |||||| |||||||||||||||||||||| || ||||||||| |||||    
T  49177478 gatgagagaaaatgat-gatgaatgattaaaataaattatttagatgaaagataatga 49177422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 318
Target Start/End: Original strand, 17368422 - 17368482
Alignment:
Q  258 tgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatagaga 318  Q
    ||||| |||||||||||||| |||||||| ||||||| ||||| ||||| ||||| |||||    
T  17368422 tgaataattaaaataaattattttgatgagagagaattattggttaggaaagagacagaga 17368482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 318
Target Start/End: Original strand, 5398029 - 5398108
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatagaga 318  Q
    |||| |||| ||||||  |||||| ||||||||||| || || ||||| ||||||||| ||| || ||||||||||||||    
T  5398029 gatgggagagaatgatgaatgaattattaaaataaactatttagatgagagagaatgagtggttaagagagagatagaga 5398108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 277
Target Start/End: Complemental strand, 15106287 - 15106254
Alignment:
Q  244 gagataatgatagatgaatgattaaaataaatta 277  Q
    |||| |||||||||||||||||||||||||||||    
T  15106287 gagagaatgatagatgaatgattaaaataaatta 15106254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 27032326 - 27032383
Alignment:
Q  259 gaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagataga 316  Q
    ||||||||||||||||||| || ||||| ||||||||| | | || ||||||||||||    
T  27032326 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagataga 27032383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 316
Target Start/End: Complemental strand, 27907767 - 27907710
Alignment:
Q  259 gaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagataga 316  Q
    ||||||||||||||||||| || ||||| ||||||||| | | || ||||||||||||    
T  27907767 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagataga 27907710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 277
Target Start/End: Complemental strand, 45781257 - 45781224
Alignment:
Q  244 gagataatgatagatgaatgattaaaataaatta 277  Q
    ||||||||||| ||||||||||||||||||||||    
T  45781257 gagataatgatggatgaatgattaaaataaatta 45781224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 316
Target Start/End: Complemental strand, 48843440 - 48843383
Alignment:
Q  259 gaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagataga 316  Q
    ||||||||||||||||||| || ||||| ||||||||| | | || ||||||||||||    
T  48843440 gaatgattaaaataaattatttagatgagagagaatgaattgttaagagagagataga 48843383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 318
Target Start/End: Original strand, 31108760 - 31108820
Alignment:
Q  258 tgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatagaga 318  Q
    ||||||||||||||||| || |||||||  ||| ||| ||||| ||||||||||| |||||    
T  31108760 tgaatgattaaaataaactattttgatgtgagaaaattattggttaggagagagacagaga 31108820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 318
Target Start/End: Original strand, 17250471 - 17250553
Alignment:
Q  236 tttgatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatagaga 318  Q
    |||||||| ||| ||||||||||||||||||||| ||||||| |||||||| ||| ||||||||  ||| | |||||||||||    
T  17250471 tttgatgaaagagaatgatagatgaatgattaaagtaaattattttgatgagagaaaatgattgattagaatagagatagaga 17250553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 19824668 - 19824592
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatag 315  Q
    ||||||||| |||| |||||||||||||||||||||||| || ||||| ||||||||| ||| |  |||||||||||    
T  19824668 gatgagagagaatgttagatgaatgattaaaataaattatttagatgagagagaatgaatggtttagagagagatag 19824592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 34928878 - 34928825
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagaga 292  Q
    ||||||||| ||||||| ||||||||||||||||||||| || |||||||||||    
T  34928878 gatgagagagaatgataaatgaatgattaaaataaattatttagatgaaagaga 34928825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 318
Target Start/End: Original strand, 3622209 - 3622288
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatagaga 318  Q
    |||||| || ||||||| | || |||||||||||||||| |||||||| ||| ||| ||||| ||| |||||||||||||    
T  3622209 gatgagtgagaatgatatacgagtgattaaaataaattattttgatgagagaaaattattggttagaagagagatagaga 3622288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 306
Target Start/End: Complemental strand, 9956691 - 9956624
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctagga 306  Q
    |||||||||  |||||| |||| |||||||||||||||| |||||||| ||||||| ||||| |||||    
T  9956691 gatgagagaagatgataaatgagtgattaaaataaattattttgatgagagagaattattggttagga 9956624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 28975651 - 28975569
Alignment:
Q  235 atttgatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatagaga 318  Q
    ||||||||| ||| ||||||| || |||||||||||||||||| |||||| ||  | ||||||||| |||||||||||| ||||    
T  28975651 atttgatgaaagaaaatgataaataaatgattaaaataaattattttgat-aataaaaatgattggttaggagagagatggaga 28975569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 14281816 - 14281877
Alignment:
Q  239 gatgagagataatgatagatgaatg-attaaaataaattactttgatgaaagagaatgattg 299  Q
    ||||||||| ||||||||||||||| |||||||||||||| || ||| || |||||||||||    
T  14281816 gatgagagagaatgatagatgaatgtattaaaataaattatttagattaacgagaatgattg 14281877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 315
Target Start/End: Complemental strand, 37484885 - 37484824
Alignment:
Q  254 tagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatag 315  Q
    |||||||||||||||||||||||| |||||||||||| ||| ||| | || || ||||||||    
T  37484885 tagatgaatgattaaaataaattattttgatgaaagaaaattattagttatgaaagagatag 37484824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 274
Target Start/End: Original strand, 1309075 - 1309113
Alignment:
Q  236 tttgatgagagataatgatagatgaatgattaaaataaa 274  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  1309075 tttgatgagagataatgatctatgaatgattaaaataaa 1309113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 18623597 - 18623631
Alignment:
Q  243 agagataatgatagatgaatgattaaaataaatta 277  Q
    ||||| |||||||||||||||||||||||||||||    
T  18623597 agagagaatgatagatgaatgattaaaataaatta 18623631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 33922869 - 33922942
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagaga 312  Q
    ||||||||| ||||||| ||||||||||||||||||| |  | ||||| ||||| ||||||  || ||||||||    
T  33922869 gatgagagagaatgataaatgaatgattaaaataaataatgtagatgagagagagtgattgattaagagagaga 33922942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 33953212 - 33953152
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattg 299  Q
    ||||||||| |||| | ||||||| |||||||||||||| || ||||| ||||||| ||||    
T  33953212 gatgagagagaatggtggatgaataattaaaataaattatttagatgagagagaattattg 33953152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 296
Target Start/End: Complemental strand, 37480345 - 37480309
Alignment:
Q  260 aatgattaaaataaattactttgatgaaagagaatga 296  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  37480345 aatgattaaaataaattacttagatgagagagaatga 37480309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 1208690 - 1208621
Alignment:
Q  249 aatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatagaga 318  Q
    |||||||||||| |||||||||||||||| ||| |||| ||||||| ||||| || ||||||||||||||    
T  1208690 aatgatagatgagtgattaaaataaattattttaatgagagagaattattggttaagagagagatagaga 1208621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 239 - 316
Target Start/End: Complemental strand, 23396017 - 23395940
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagataga 316  Q
    ||||||||| ||||||| ||||||||||||||||||||| || ||||| ||||||||| | | || ||||||||||||    
T  23396017 gatgagagagaatgataaatgaatgattaaaataaattatttagatgatagagaatgagttgttaagagagagataga 23395940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 32832600 - 32832676
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatag 315  Q
    ||||||||| |||| | |||||||||||||||||||||| || ||||| ||||||||| ||| || |||||||||||    
T  32832600 gatgagagagaatgttggatgaatgattaaaataaattatttagatgagagagaatgaatggttaagagagagatag 32832676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 318
Target Start/End: Original strand, 28640147 - 28640226
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatagaga 318  Q
    ||||| ||| ||||||||||||||||||||||||||||| |||||| ||||||| | |||   ||||||| |||||||||    
T  28640147 gatgaaagagaatgatagatgaatgattaaaataaattattttgataaaagagagttatttattaggagaaagatagaga 28640226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 318
Target Start/End: Complemental strand, 21836066 - 21835991
Alignment:
Q  243 agagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatagaga 318  Q
    ||||| |||||||||||| |||||||||||||||| ||||||||   | ||| ||||| ||||| |||||||||||    
T  21836066 agagagaatgatagatgagtgattaaaataaattattttgatgaggaaaaattattggttaggaaagagatagaga 21835991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 299
Target Start/End: Original strand, 40204735 - 40204794
Alignment:
Q  240 atgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattg 299  Q
    |||||||| |||||||||||||| |||||||||||||| || | ||||||||||| ||||    
T  40204735 atgagagagaatgatagatgaattattaaaataaattatttaggtgaaagagaataattg 40204794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 41069680 - 41069737
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatga 296  Q
    ||||||||| ||||||  ||||||||||||||||||||| || ||||| |||||||||    
T  41069680 gatgagagagaatgatgaatgaatgattaaaataaattatttagatgagagagaatga 41069737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 11226229 - 11226153
Alignment:
Q  240 atgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagataga 316  Q
    |||||||| |||||   ||||||||||||||||||||| || ||||| ||||||||| | | || ||||||||||||    
T  11226229 atgagagagaatgacgaatgaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagataga 11226153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 286
Target Start/End: Original strand, 6752081 - 6752128
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatga 286  Q
    ||||||||| ||||||| ||||||||||||||||||||| || |||||    
T  6752081 gatgagagagaatgataaatgaatgattaaaataaattatttagatga 6752128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 294
Target Start/End: Complemental strand, 39729070 - 39729015
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaat 294  Q
    ||||||||| ||||||  ||||||||||||||||||||| || ||||| |||||||    
T  39729070 gatgagagagaatgatgaatgaatgattaaaataaattatttagatgagagagaat 39729015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 299
Target Start/End: Complemental strand, 8209359 - 8209317
Alignment:
Q  257 atgaatgattaaaataaattactttgatgaaagagaatgattg 299  Q
    ||||||||||||||||||||| |||||||| ||||||| ||||    
T  8209359 atgaatgattaaaataaattattttgatgagagagaattattg 8209317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 3496805 - 3496862
Alignment:
Q  259 gaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagataga 316  Q
    ||||||||||||||||||| || ||||| ||||||||| | | || ||||||||||||    
T  3496805 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagataga 3496862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 38529887 - 38529936
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaa 288  Q
    ||||||||||||| ||  ||||||||||||||||||||| || |||||||    
T  38529887 gatgagagataataatttatgaatgattaaaataaattatttagatgaaa 38529936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 316
Target Start/End: Complemental strand, 10688692 - 10688615
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagataga 316  Q
    ||||||||| ||||||  ||||||||||||||||||||| || ||||| ||||||||| | | || ||||||||||||    
T  10688692 gatgagagagaatgatgaatgaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagataga 10688615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 316
Target Start/End: Complemental strand, 39973056 - 39972999
Alignment:
Q  259 gaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagataga 316  Q
    ||||||||||||||||||| |||||||| ||||||||| | | || ||||||||||||    
T  39973056 gaatgattaaaataaattattttgatgagagagaatgagttgttaagagagagataga 39972999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 310
Target Start/End: Original strand, 42681853 - 42681914
Alignment:
Q  249 aatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagaga 310  Q
    |||||||||||| | |||||||||||||| ||||||  |||| ||| |||||||||||||||    
T  42681853 aatgatagatgagtaattaaaataaattattttgatagaagataattattggctaggagaga 42681914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 34305871 - 34305819
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagag 291  Q
    ||||||||| |||||||||||| ||||||||||| |||| |||||||| ||||    
T  34305871 gatgagagagaatgatagatgagtgattaaaatatattattttgatgagagag 34305819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 52404758 - 52404698
Alignment:
Q  258 tgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatagaga 318  Q
    ||||| |||||||||||||| |||||||||| | ||| ||||  |||||||||||||||||    
T  52404758 tgaataattaaaataaattattttgatgaaaaataattattgattaggagagagatagaga 52404698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 316
Target Start/End: Complemental strand, 4037205 - 4037148
Alignment:
Q  259 gaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagataga 316  Q
    ||||||||||||||||||| || ||||| ||||||||| | | || ||||||||||||    
T  4037205 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagataga 4037148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 316
Target Start/End: Complemental strand, 11233570 - 11233513
Alignment:
Q  259 gaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagataga 316  Q
    ||||||||||||||||||| || ||||| ||||||||| | | || ||||||||||||    
T  11233570 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagataga 11233513  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 316
Target Start/End: Complemental strand, 49279553 - 49279496
Alignment:
Q  259 gaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagataga 316  Q
    ||||||||||||||||||| || ||||| ||||||||| | | || ||||||||||||    
T  49279553 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagataga 49279496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 299
Target Start/End: Complemental strand, 7654642 - 7654578
Alignment:
Q  236 tttgatgagagataatgatagatgaatgattaaaataaatta-ctttgatgaaagagaatgattg 299  Q
    |||||||||||| |||| ||||||||||||||| ||| ||||  ||| |||| ||||||||||||    
T  7654642 tttgatgagagagaatggtagatgaatgattaatatatattatttttcatgagagagaatgattg 7654578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 20345118 - 20345074
Alignment:
Q  256 gatgaatgattaaaataaattactttgatgaaagagaatgattgg 300  Q
    |||||||||||||||||||||| ||  |||| |||||||||||||    
T  20345118 gatgaatgattaaaataaattatttaaatgagagagaatgattgg 20345074  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 258 - 318
Target Start/End: Original strand, 42691095 - 42691155
Alignment:
Q  258 tgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatagaga 318  Q
    |||||||||||||||||||| |||||||| ||||||| |||   |||||||||||||||||    
T  42691095 tgaatgattaaaataaattattttgatgagagagaattattaattaggagagagatagaga 42691155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 317
Target Start/End: Original strand, 27311793 - 27311859
Alignment:
Q  251 tgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatagag 317  Q
    ||||||||||||||||||||||| ||| |||||||  ||||||| ||| | || |||||||||||||    
T  27311793 tgatagatgaatgattaaaataatttattttgatgtgagagaattattagttaagagagagatagag 27311859  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 314
Target Start/End: Original strand, 36436045 - 36436108
Alignment:
Q  251 tgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagata 314  Q
    ||||| |||||| |||||||||||| | |||||||| ||||||||||| | ||| |||||||||    
T  36436045 tgataaatgaattattaaaataaatcattttgatgagagagaatgattagttagaagagagata 36436108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 316
Target Start/End: Original strand, 38701532 - 38701591
Alignment:
Q  257 atgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagataga 316  Q
    |||| |||||||||| ||||| |||||||||||||||| ||||| ||| ||||| |||||    
T  38701532 atgagtgattaaaattaattattttgatgaaagagaattattggttagaagagatataga 38701591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 33957488 - 33957526
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaatta 277  Q
    ||||||| | |||||||||||||||||||||||||||||    
T  33957488 gatgagaaagaatgatagatgaatgattaaaataaatta 33957526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 315
Target Start/End: Original strand, 37685200 - 37685271
Alignment:
Q  242 gagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagatag 315  Q
    |||||| |||| | |||||||||||||||||||||| || ||||  ||||||||| ||| || |||||||||||    
T  37685200 gagagagaatgttggatgaatgattaaaataaattatttagatg--agagaatgaatggttaagagagagatag 37685271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 299
Target Start/End: Complemental strand, 40591089 - 40591039
Alignment:
Q  249 aatgatagatgaatgattaaaataaattactttgatgaaagagaatgattg 299  Q
    |||| ||||| |||||||||||||||||| || ||||||||||||| ||||    
T  40591089 aatgttagataaatgattaaaataaattatttagatgaaagagaataattg 40591039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 43279295 - 43279245
Alignment:
Q  236 tttgatgagagataatgatagatgaatgattaaaataaattactttgatga 286  Q
    |||||||  ||| ||||||||||||||||||||||||||||| ||| ||||    
T  43279295 tttgatggaagagaatgatagatgaatgattaaaataaattattttaatga 43279245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 316
Target Start/End: Original strand, 2628443 - 2628520
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagataga 316  Q
    ||||||||| ||||||  || ||||||||||||||| || || ||||| ||||||||| | | || ||||||||||||    
T  2628443 gatgagagagaatgatgaataaatgattaaaataaactatttagatgagagagaatgagttgttaagagagagataga 2628520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 16876743 - 16876800
Alignment:
Q  259 gaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagataga 316  Q
    ||||||||||||||||||| || ||||| ||||||||| | | || ||||||||||||    
T  16876743 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagataga 16876800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 18867954 - 18868011
Alignment:
Q  259 gaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagataga 316  Q
    ||||||||||||||||||| || ||||| ||||||||| | | || ||||||||||||    
T  18867954 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagataga 18868011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 23185929 - 23185986
Alignment:
Q  259 gaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagataga 316  Q
    ||||||||||||||||||| || ||||| ||||||||| | | || ||||||||||||    
T  23185929 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagataga 23185986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 46425344 - 46425401
Alignment:
Q  259 gaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagataga 316  Q
    ||||||||||||||||||| || ||||| ||||||||| | | || ||||||||||||    
T  46425344 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagataga 46425401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 19699927 - 19699895
Alignment:
Q  254 tagatgaatgattaaaataaattactttgatga 286  Q
    |||||||||||||||||||||||| ||||||||    
T  19699927 tagatgaatgattaaaataaattattttgatga 19699895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 32204826 - 32204766
Alignment:
Q  239 gatgagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattg 299  Q
    |||||||||  ||||||||| |||||||||||||||||| ||  |||| ||| ||||||||    
T  32204826 gatgagagaagatgatagataaatgattaaaataaattatttatatgagagataatgattg 32204766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 263754 - 263823
Alignment:
Q  245 agataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattggctaggagagagata 314  Q
    ||||||||||| ||||||||||||||||||||  |||||| | ||| | ||||||| ||||| |||||||    
T  263754 agataatgatacatgaatgattaaaataaattcttttgataagagaaagtgattggttaggaaagagata 263823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 300
Target Start/End: Complemental strand, 31652 - 31594
Alignment:
Q  242 gagagataatgatagatgaatgattaaaataaattactttgatgaaagagaatgattgg 300  Q
    |||||| ||| ||||||||||||||||||||||||| || ||||| | | |||||||||    
T  31652 gagagagaataatagatgaatgattaaaataaattatttagatgataaaaaatgattgg 31594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 296
Target Start/End: Complemental strand, 15154 - 15118
Alignment:
Q  260 aatgattaaaataaattactttgatgaaagagaatga 296  Q
    |||||||||||||||||| |||||||| |||||||||    
T  15154 aatgattaaaataaattattttgatgagagagaatga 15118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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