View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5312_low_25 (Length: 350)
Name: NF5312_low_25
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_low_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 15 - 333
Target Start/End: Original strand, 8974016 - 8974334
Alignment:
| Q |
15 |
acttggtaatggagtctcactctctggcttatctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8974016 |
acttggtaatggagtctcactctctggcttatctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatatt |
8974115 |
T |
|
| Q |
115 |
acacaactaatcaaagtgaaaagtaagattgttgtctgtgaagacaagaatggaactcttcttgatcaagtttctaatttgcttacagtaatagttgtag |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8974116 |
acacaactaatcaaagtgaaaagtaagattgttgtctgtgaagacaagaatggaactctttttgatcaagtttctaatttgcttacagtaatagttgtag |
8974215 |
T |
|
| Q |
215 |
gagctgttattatatcaaacacttcacaaaataatctatcacaacttttagggttccagcttccatatatcattattaaccaaaccaatggagaaattat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8974216 |
gagctgttattatatcaaacacttcacaaaataatctatcacaacttttagggttccagcttccatacatcattattaaccaaaccaatggagaaattat |
8974315 |
T |
|
| Q |
315 |
caaagattacatacaaagt |
333 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
8974316 |
caaagattacatacaaagt |
8974334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 15 - 329
Target Start/End: Original strand, 8962620 - 8962934
Alignment:
| Q |
15 |
acttggtaatggagtctcactctctggcttatctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatatt |
114 |
Q |
| |
|
|||||||||||||||||||||| | ||||| |||| ||| |||||||||||||||||||||||||||| |||||||||| |||| |||||||||| || |
|
|
| T |
8962620 |
acttggtaatggagtctcactcaccggcttctcttcctatataggaaacttctctgctagtaatattcccattgttttcaaaggtatgtgtgacaatttt |
8962719 |
T |
|
| Q |
115 |
acacaactaatcaaagtgaaaagtaagattgttgtctgtgaagacaagaatggaactcttcttgatcaagtttctaatttgcttacagtaatagttgtag |
214 |
Q |
| |
|
||| ||||||||| |||||| || ||||||| || |||||||||||||||| || |||| | ||||| ||| |||| || ||| || | |||||||| |
|
|
| T |
8962720 |
acagaactaatcagagtgaagagcgagattgtggtttgtgaagacaagaatgaaagtctttctaatcaaatttataatgtggttaaagcagaagttgtag |
8962819 |
T |
|
| Q |
215 |
gagctgttattatatcaaacacttcacaaaataatctatcacaacttttagggttccagcttccatatatcattattaaccaaaccaatggagaaattat |
314 |
Q |
| |
|
||||| || ||||||||||||| ||||| || |||||||| || ||| ||| || |||||||| |||||||||||||| | ||||||||||| | |
|
|
| T |
8962820 |
gagctatttttatatcaaacacaacacaagatgatctatcagaagacttacggtacctgcttccatccatcattattaaccagaaaaatggagaaatggt |
8962919 |
T |
|
| Q |
315 |
caaagattacataca |
329 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
8962920 |
caaagattacataca |
8962934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 8946470 - 8946351
Alignment:
| Q |
15 |
acttggtaatggagtctcactctctggcttatctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatatt |
114 |
Q |
| |
|
|||||||||||||||||||||| | || | ||| |||||||||||| ||||||||||| ||| | |||||||||||||||||| ||| |||||| || |
|
|
| T |
8946470 |
acttggtaatggagtctcactcacaggttggtctaattatctaggaaatttctctgctagcaatttgccaattgttttcatgggtttgtgcgacaatgtt |
8946371 |
T |
|
| Q |
115 |
acacaactaatcaaagtgaa |
134 |
Q |
| |
|
||| || ||||||||||||| |
|
|
| T |
8946370 |
acagaattaatcaaagtgaa |
8946351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 233
Target Start/End: Complemental strand, 21687618 - 21687400
Alignment:
| Q |
15 |
acttggtaatggagtctcactctctggcttatctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatatt |
114 |
Q |
| |
|
|||||||||||||||||||||| |||| || ||||| |||||||||||||||||||||| ||| ||||||||||||| ||||||| |||||||||| || |
|
|
| T |
21687618 |
acttggtaatggagtctcactcactggtttgtctttctatctaggaaacttctctgctaacaattttccaattgtttttatgggtatgtgtgacaatgtt |
21687519 |
T |
|
| Q |
115 |
acacaactaatcaaagtgaaaagtaagattgttgtctgtgaagacaagaatggaactcttcttgatcaagtttctaatttgcttacagtaatagttgtag |
214 |
Q |
| |
|
| | || ||| || |||||| || |||||||| || ||||||| ||| |||| |||||||| ||| ||| | | |||| || || || || |||||| | |
|
|
| T |
21687518 |
aaagaattaaacacagtgaagagaaagattgtggtttgtgaaggcaataatgaaactcttcatgaacaaatgtttaatgtgtataaagcaaaagttgttg |
21687419 |
T |
|
| Q |
215 |
gagctgttattatatcaaa |
233 |
Q |
| |
|
||| |||| |||||||||| |
|
|
| T |
21687418 |
gaggtgtttttatatcaaa |
21687400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 34963123 - 34963079
Alignment:
| Q |
127 |
aaagtgaaaagtaagattgttgtctgtgaagacaagaatggaact |
171 |
Q |
| |
|
||||||||||| |||||| | || ||||||||||||||||||||| |
|
|
| T |
34963123 |
aaagtgaaaagcaagattatagtgtgtgaagacaagaatggaact |
34963079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University