View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_low_3 (Length: 712)
Name: NF5312_low_3
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 3 - 389
Target Start/End: Complemental strand, 44567278 - 44566892
Alignment:
| Q |
3 |
tggagtagcaaaggtagatgcaaatgcaacaacagaatgataatagatacttaccaaatagagataatactatgagaagacacgcacccaattgaactgg |
102 |
Q |
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| T |
44567278 |
tggagtaacaaaggtagatgcaaatgcaacaacagaatgataatagatacttaccaaatagagataatactatgagaagacacgcacccaattgaactgg |
44567179 |
T |
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| Q |
103 |
tctgcggcttcccatttttgtcccagcaattgtgtgaacattttcggttagagttgttgatcccattccagtaccccagagaccagccaacaaactagaa |
202 |
Q |
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| T |
44567178 |
tctgcggcttcccatttttgtcccagcaattgtgtgaacattttcggttagagttgttgatcccattccagtaccccagagaccagccaacaaactagaa |
44567079 |
T |
|
| Q |
203 |
aaaccttctagaccaataccgcgacttagaaccccaggagttggaggtccagatgctgctaaaagtgaagaagtgtgatatgtgccaacctacaaggtta |
302 |
Q |
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| T |
44567078 |
aaaccttctagaccaataccgcgactaagaaccccaggagttggaggtccagatgctgctaaaagtgaagaagtgtgatatgtgccaacctacaaggtta |
44566979 |
T |
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| Q |
303 |
aaacaaatgaacctcaacaacaaagtacaatgattatatatatcatttcaattttgacttagcatactgtaaacatttcatagatca |
389 |
Q |
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| T |
44566978 |
aaacaaatgaacctcaacaacaaagtacaatgattatatatatcatttcaattttgacttagcatactgtaaacatttcatagatca |
44566892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 41 - 307
Target Start/End: Original strand, 36031503 - 36031769
Alignment:
| Q |
41 |
gataatagatacttaccaaatagagataatactatgagaagacacgcacccaattgaactggtctgcggcttcccatttttgtcccagcaattgtgtgaa |
140 |
Q |
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| T |
36031503 |
gataatagatacttacccacgagagataacactatcagaatacatgcacccaattgaactgctctgcggcttcccattttagtcacagcaattgtatgaa |
36031602 |
T |
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| Q |
141 |
cattttcggttagagttgttgatcccattccagtaccccagagaccagccaacaaactagaaaaaccttctagaccaataccgcgacttagaaccccagg |
240 |
Q |
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| T |
36031603 |
cattttcagttaaagtggtagatccagttccagtaccccagagaccagccaaaacactagaaagaccttccagaccaattccgcgactaagaaccccagg |
36031702 |
T |
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| Q |
241 |
agttggaggtccagatgctgctaaaagtgaagaagtgtgatatgtgccaacctacaaggttaaaaca |
307 |
Q |
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| T |
36031703 |
agttggaggtctagatgctactaataatgaagatgcatgatatgagccaacctacaaagttaaaaca |
36031769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 425 - 555
Target Start/End: Complemental strand, 44566895 - 44566765
Alignment:
| Q |
425 |
atcaataaaaacacaagtttcattctgcggtgctaaaatttcaaatcttattttagggatagaaaatcgagtcatgcactgtgttgttccattgaacgag |
524 |
Q |
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| T |
44566895 |
atcaataaaaacacaagtttcattctgcggtgctaaaatttcaaatcttattttagggatagaaaatcgagtcatgcactgtgttgttccattgaacgag |
44566796 |
T |
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| Q |
525 |
atcaagttagactataaacgtactcagagtc |
555 |
Q |
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| T |
44566795 |
atcaagttagactatcaacgtattcagagtc |
44566765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 613 - 687
Target Start/End: Complemental strand, 44566707 - 44566633
Alignment:
| Q |
613 |
ctaaccgaatccacagaagagattaaggaaacgacgcacatcacaatagccattttccaattgaacacaggagta |
687 |
Q |
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| T |
44566707 |
ctaaccgaatccacagaagagattaaggaaacgacacacatcacaatagccattttccaattgaacacaggagta |
44566633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 613 - 687
Target Start/End: Original strand, 36032397 - 36032471
Alignment:
| Q |
613 |
ctaaccgaatccacagaagagattaaggaaacgacgcacatcacaatagccattttccaattgaacacaggagta |
687 |
Q |
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| T |
36032397 |
ctaaccgaatccacggatgagattaaggaaaccacacacatcacaagagccattttccagtggaagacaggagta |
36032471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 342 - 415
Target Start/End: Original strand, 36031837 - 36031910
Alignment:
| Q |
342 |
atatcatttcaattttgacttagcatactgtaaacatttcatagatcagttaattctattatttgacttatcta |
415 |
Q |
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| T |
36031837 |
atatgatttaaattttgatatagcatattgttaatctttcatagatcagtaaactctattatttgacttatcta |
36031910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 107 - 251
Target Start/End: Complemental strand, 20124273 - 20124129
Alignment:
| Q |
107 |
cggcttcccatttttgtcccagcaattgtgtgaacattttcggttagagttgttgatcccattccagtaccccagagaccagccaacaaactagaaaaac |
206 |
Q |
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|||||||||||||| ||| | |||||||| |||||||||||||||| |||||| ||||| ||||||| ||||||||||||||||| | |||| ||| || |
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| T |
20124273 |
cggcttcccattttagtcacggcaattgtatgaacattttcggttaaagttgtagatccagttccagttccccagagaccagccaagacactacaaagac |
20124174 |
T |
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| Q |
207 |
cttctagaccaataccgcgacttagaaccccaggagttggaggtc |
251 |
Q |
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| T |
20124173 |
cttccaaaccaattcctcgactaagaactccaggagttggaggtc |
20124129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 613 - 671
Target Start/End: Complemental strand, 20122606 - 20122548
Alignment:
| Q |
613 |
ctaaccgaatccacagaagagattaaggaaacgacgcacatcacaatagccattttcca |
671 |
Q |
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| T |
20122606 |
ctaaccgaatccacggatgagattaaggaaaccacacacattacaagagccattttcca |
20122548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 16069361 - 16069436
Alignment:
| Q |
25 |
aatgcaacaacagaatgataatagatacttaccaaatagagataatactatgagaagacacgcacccaattgaact |
100 |
Q |
| |
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|||| ||||||| |||||||||||||||||| |||| |||||||||||| | |||||||| ||||| ||||||||| |
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| T |
16069361 |
aatgaaacaacaaaatgataatagatacttagcaaagagagataatactgtcagaagacatgcacctaattgaact |
16069436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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