View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_low_30 (Length: 337)
Name: NF5312_low_30
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_low_30 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 337
Target Start/End: Original strand, 51169110 - 51169428
Alignment:
| Q |
19 |
gaaagtgcatcagtggctcttatatgcttgcaacaaaggattcctttcattgctattagggctctctctgacttggctggtggcggcaccgcggagtcga |
118 |
Q |
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| T |
51169110 |
gaaagtgcatcagtggctcttatatgcttgcaacaaaggattcctttcattgctattagggctctctctgacttggctggtggcggcaccgcggagtcga |
51169209 |
T |
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| Q |
119 |
acgaggctgataccttctcaccactggctgcaaccaactctgttgctgtggtcattgagtttgtgaagctcttgtcaaaccacaccaagtagtgatccat |
218 |
Q |
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| T |
51169210 |
acgaggctgataccttctcaccactggctgcaaccaactctgttgctgtggtcattgagtttgtgaagctcttgtcaaaccacaccaagtagtgatccat |
51169309 |
T |
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| Q |
219 |
ttggtgatgtttttaataatccgtaattagttcaatgacatgcacatgtaaacaacaactttgttcttggtttggttgtctggaaaataataaagcataa |
318 |
Q |
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| T |
51169310 |
tttgtgatgtttttaataatccgtaattagttcaatggcatgcacatgtaaacaacaactttgttcttggtttggttgtctggaaaataataaagcataa |
51169409 |
T |
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| Q |
319 |
catttctttcacgtaaatt |
337 |
Q |
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||||||||||||||||||| |
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| T |
51169410 |
catttctttcacgtaaatt |
51169428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 51153155 - 51153455
Alignment:
| Q |
19 |
gaaagtgcatcagtggctcttatatgcttgcaacaaaggattcctttcattgctattagggctctctctgacttggctggtggcggcaccgcggagtcga |
118 |
Q |
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| T |
51153155 |
gaaagtgcatcagtggctcttatatgcttgcaacaaaggattcctttcattgctattagggctctctctgacttggctggtggcggcaccgcggagtcga |
51153254 |
T |
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| Q |
119 |
acgaggctgataccttctcaccactggctgcaaccaactctgttgctgtggtcattgagtttgtgaagctcttg---tcaaaccacaccaagtagtgatc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||| | |||| || | | |
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| T |
51153255 |
acgaggctgataccttctcaccactggctgcaaccaactctgttgctgtggtcattgagtttgtgaagctattgtcatcacaccactctaagtggtaaac |
51153354 |
T |
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| Q |
216 |
ca---tttggtgatgtttttaataatccgtaattagttcaatgacatgcacatgtaaacaacaactttgttcttggtttggttgtctggaaaataataaa |
312 |
Q |
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| | || ||||||||| ||||||||||||||||| |||| | ||||||||||| |||||||||||||||| | ||| ||||| |||| |||||||| |
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| T |
51153355 |
tatgttatgatgatgttttcaataatccgtaattagtgcaattatatgcacatgtagacaacaactttgttct--ggttgtttgtccggaatataataaa |
51153452 |
T |
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| Q |
313 |
gca |
315 |
Q |
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||| |
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| T |
51153453 |
gca |
51153455 |
T |
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