View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_low_32 (Length: 329)
Name: NF5312_low_32
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 43930022 - 43929765
Alignment:
| Q |
20 |
aattttatccgataagaggatgaatgttaaagaaaatgttcctagcatttatctagttacaaacttacaatttcctcctgttgtttgcttcatctcatct |
119 |
Q |
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| T |
43930022 |
aattttatccaataagacaatgaatgttaaagagagtgatcctagcatttttctagttacaaacttacaatttcctcgggttgtttgcttcatctcatct |
43929923 |
T |
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| Q |
120 |
tatatgaaacttgagaaatcagctgtactgtagtaatcttaaagcctaaaaaaccataaaattatataaaagcataaatagcttacggttcccaaaagca |
219 |
Q |
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||| || |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43929922 |
tatttggaacttgagaaatcagctgcacagtagtaatcttaaagcctaaaaaaccataaaattatataaaagcataaatagcttacggttcccaaaagca |
43929823 |
T |
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| Q |
220 |
agtaggagtatatgattaatttctttactttcaagataacttaaagatgacatcccct |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43929822 |
agtaggagtatatgattaatttctttactttcaagataacttaaagatgacatcccct |
43929765 |
T |
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