View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_low_35 (Length: 324)
Name: NF5312_low_35
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 42 - 309
Target Start/End: Complemental strand, 32822111 - 32821841
Alignment:
| Q |
42 |
ggccatacacttgtgcgtgtttgaaaatagattatttatcaatcttcaaaagnnnnnnntatcaaagattgatttgagtgctactgtttatttaaaagaa |
141 |
Q |
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| T |
32822111 |
ggccatacacttgtgcgtgtttaaaaatagattatttatcaatcttcaaaagaaaaaaatatcaaagattgatttgagtgctactgtttatttaaaagaa |
32822012 |
T |
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| Q |
142 |
gaa---ataagtcaaaccggtaggtaacatttcatatnnnnnnnggtgacatttcacttgaatttattcatataatttaatacaaatggactagcattaa |
238 |
Q |
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||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32822011 |
gaagaaataagtcaaaccggtaggtaacatttcatataaaaaaaggtgacatttcacttgaatttattcatataatttaatacaaatggactagcattaa |
32821912 |
T |
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| Q |
239 |
aaataatttgtatataatcaatcaattacgatcgtttgaactttaatttcgattatatttctttcaaatgt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32821911 |
aaataatttgtatataatcaatcaattacgatcgtttgaactttaatttcgattatatttctttcaaatgt |
32821841 |
T |
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