View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5312_low_37 (Length: 318)

Name: NF5312_low_37
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5312_low_37
NF5312_low_37
[»] chr3 (4 HSPs)
chr3 (18-309)||(54141860-54142160)
chr3 (18-232)||(53287007-53287229)
chr3 (49-240)||(52806432-52806640)
chr3 (258-309)||(53288024-53288075)
[»] chr6 (2 HSPs)
chr6 (18-232)||(11842510-11842732)
chr6 (258-309)||(11841738-11841789)
[»] chr1 (7 HSPs)
chr1 (49-117)||(23735575-23735643)
chr1 (49-117)||(23649950-23650018)
chr1 (49-117)||(23618604-23618673)
chr1 (163-240)||(23618484-23618562)
chr1 (163-240)||(23735455-23735533)
chr1 (172-212)||(23626871-23626911)
chr1 (163-240)||(23649830-23649908)
[»] chr4 (1 HSPs)
chr4 (204-237)||(46021246-46021279)


Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 54141860 - 54142160
Alignment:
Q  18 tccccaatggtcatcgaagtacaaatgcaatcaaataggtaactcaaatcatcactttttaatttcaaccaattgtatgtatgtttttattctagattgt 117  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  54141860 tccccaatggttatcgaagtacaaatgcaatcaaataggtaactcaaatcatctctttttaatttcaaccaattgtatgtatgtttttattctagattgt 54141959  T
Q  118 aattgtttaagattaggcaacttaaagtgaaagtaagtttgctca---------atgttgaactattaatatactgtattttctgcagttggttgaatta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||| |||||||||| ||||||||||||||    
T  54141960 aattgtttaagattaggcaacttaaagtgaaagtaagtttgctcaatgttgtccatgttgaactattaatataccgtattttctgtagttggttgaatta 54142059  T
Q  209 atttgggttaacatgcactccatccatctttctttatcatgttgaactatcgattcgtacaagaatttgttctagttctctttctgtatcattgcctttg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54142060 atttgggttaacatgcactccatccatctttctttatcatgttgaactatcgattcgtacaagaatttgttctagttctctttctgtatcattgcctttg 54142159  T
Q  309 c 309  Q
    |    
T  54142160 c 54142160  T

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Target: chr3; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 53287007 - 53287229
Alignment:
Q  18 tccccaatggtcatcgaagtacaaatgcaatcaaataggtaactcaaatcatcactttttaatttcaaccaattgtatgtatgtttttattctagattgt 117  Q
    |||||||| |||||| |||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |    
T  53287007 tccccaatcgtcatcaaagtacaaatgcaaacaaacaggtaactcaaatcatctctttttaatttcaaccaattgtatgtacgtttttattctagattct 53287106  T
Q  118 aa-------ttgtttaagattaggcaactt-aaagtgaaagtaagtttgctcaatgttgaactattaatatactgtattttctgcagttggttgaattaa 209  Q
    |        ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  53287107 atattgtctttgtttaagattaggcaactttaaagtgaaagtaagtttgctcaatgttgaactattaatatactgtattttctgcagttggttgaattat 53287206  T
Q  210 tttgggttaacatgcactccatc 232  Q
    |||||||||||||||||||||||    
T  53287207 tttgggttaacatgcactccatc 53287229  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 240
Target Start/End: Complemental strand, 52806640 - 52806432
Alignment:
Q  49 caaataggtaactcaaatcatcacttttt-aatttcaaccaattgtatgtatgtttttattctagattgtaa----ttgtttaagattaggcaa------ 137  Q
    |||||||||| ||||||||||| |||||| ||| ||||||||||||||| |||||||||||||||| ||| |    ||||||||||||||| ||          
T  52806640 caaataggtacctcaaatcatctcttttttaatatcaaccaattgtatgcatgtttttattctagagtgtcatactttgtttaagattaggaaacttaaa 52806541  T
Q  138 --cttaaagtgaaagtaagtttgctcaatgttgaac-tatt--aatat-actgtattttctgcagttggttgaattaatttgggttaacatgcactccat 231  Q
      |||||||||||||||||||||||||||||||  | | ||  | ||| | | | ||||||||||||||||||||||| |||||||||| |||| ||| |    
T  52806540 ctcttaaagtgaaagtaagtttgctcaatgttgtccatgttgaactatgaatatgttttctgcagttggttgaattaacttgggttaacttgcattcctt 52806441  T
Q  232 ccatctttc 240  Q
    |||||||||    
T  52806440 ccatctttc 52806432  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 53288024 - 53288075
Alignment:
Q  258 tcgattcgtacaagaatttgttctagttctctttctgtatcattgcctttgc 309  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  53288024 tcgattcgcacaagaatttgttctagttctctttttgtatcattgcctttgc 53288075  T

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Target: chr6 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 11842732 - 11842510
Alignment:
Q  18 tccccaatggtcatcgaagtacaaatgcaatcaaataggtaactcaaatcatcactttttaatttcaaccaattgtatgtatgtttttattctagattgt 117  Q
    |||||||| |||||| |||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |    
T  11842732 tccccaatcgtcatcaaagtacaaatgcaaacaaacaggtaactcaaatcatctctttttaatttcaaccaattgtatgtacgtttttattctagattct 11842633  T
Q  118 aa-------ttgtttaagattaggcaactt-aaagtgaaagtaagtttgctcaatgttgaactattaatatactgtattttctgcagttggttgaattaa 209  Q
    |        ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  11842632 atattgtctttgtttaagattaggcaactttaaagtgaaagtaagtttgctcaatgttgaactattaatatactgtattttctgcagttggttgaattat 11842533  T
Q  210 tttgggttaacatgcactccatc 232  Q
    |||||||||||||||||||||||    
T  11842532 tttgggttaacatgcactccatc 11842510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 11841789 - 11841738
Alignment:
Q  258 tcgattcgtacaagaatttgttctagttctctttctgtatcattgcctttgc 309  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  11841789 tcgattcgcacaagaatttgttctagttctctttttgtatcattgcctttgc 11841738  T

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Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 23735643 - 23735575
Alignment:
Q  49 caaataggtaactcaaatcatcactttttaatttcaaccaattgtatgtatgtttttattctagattgt 117  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  23735643 caaataggtaactcgaatcatcactttttaatatcaaccaattgtatggatgtttttattctagattgt 23735575  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 23650018 - 23649950
Alignment:
Q  49 caaataggtaactcaaatcatcactttttaatttcaaccaattgtatgtatgtttttattctagattgt 117  Q
    |||||||||||||| |||||| |||||||||| ||||||||||||||| ||||||||||||||||||||    
T  23650018 caaataggtaactcgaatcattactttttaatatcaaccaattgtatggatgtttttattctagattgt 23649950  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 23618673 - 23618604
Alignment:
Q  49 caaataggtaactcaaatcatcactttttaatttcaaccaattgtatgtatg-tttttattctagattgt 117  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||    
T  23618673 caaataggtaactcgaatcatcactttttaatatcaaccaattgtatggatgttttttattctagattgt 23618604  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 23618562 - 23618484
Alignment:
Q  163 atgttgaactattaatatactgtattttctgcagttggttgaattaatttgggttaa-catgcactccatccatctttc 240  Q
    |||||||| |||||||| ||||||||||||||| ||||||||||||||||  ||||| |||| ||| |||| |||||||    
T  23618562 atgttgaattattaatacactgtattttctgcacttggttgaattaatttaagttaaccatgtactacatctatctttc 23618484  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 23735533 - 23735455
Alignment:
Q  163 atgttgaactattaatatactgtattttctgcagttggttgaattaatttgggttaa-catgcactccatccatctttc 240  Q
    ||||| || |||||||| ||||||||||||||| ||||||||||||||||  ||||| |||| ||| |||| |||||||    
T  23735533 atgttaaattattaatacactgtattttctgcacttggttgaattaatttaagttaaccatgtactacatctatctttc 23735455  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 23626871 - 23626911
Alignment:
Q  172 tattaatatactgtattttctgcagttggttgaattaattt 212  Q
    |||||||| ||||||||||||||| ||||||||||||||||    
T  23626871 tattaatacactgtattttctgcacttggttgaattaattt 23626911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 23649908 - 23649830
Alignment:
Q  163 atgttgaactattaatatactgtattttctgcagttggttgaattaatttgggttaa-catgcactccatccatctttc 240  Q
    ||||| || ||||| || ||||||||||||||| ||||||||||||||||  ||||| |||| ||| |||| |||||||    
T  23649908 atgtttaattattattacactgtattttctgcacttggttgaattaatttaagttaaccatgtactacatctatctttc 23649830  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 46021246 - 46021279
Alignment:
Q  204 aattaatttgggttaacatgcactccatccatct 237  Q
    |||||||||| |||||||||||||||||||||||    
T  46021246 aattaatttgagttaacatgcactccatccatct 46021279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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