View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_low_4 (Length: 637)
Name: NF5312_low_4
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_low_4 |
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| [»] scaffold1572 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 576; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 1 - 621
Target Start/End: Complemental strand, 21319377 - 21318753
Alignment:
| Q |
1 |
atcagaagaacaaatacctccagcaattataaagagtcctatccaaaatctcagtagctataactgacaactttcaaattactctcccagctgcatggac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21319377 |
atcagaagaacaaatacctccagcaattataaagagtcctatccaaaatctcagtagctataactggcaactttcaaattactctcccagctgcatggac |
21319278 |
T |
|
| Q |
101 |
tgaagtagcaaaaacagtacacatcagaaaggtttatacagaaaaatgaagtgcaaaaatatcagaaatcacagtaagttataaacaccgtaagttataa |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21319277 |
tgaagtagcaaaaacagtacacgtcagaaaggtttatatagaaaaatgaagtgcaaaaatatcagaaatcacagtaagttataaacaacgtaagttataa |
21319178 |
T |
|
| Q |
201 |
ctaatagcagaaaaccaaggcaggcatttgggttcaagcaccattgggctatgtgattcgagaaatagatgagacaccgtttcttctcctccacaatctc |
300 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
21319177 |
ctaatagcagaaaaccaagggaggcatttgggttcaagcaccattgggctatgtgattcaagaaatagatgagacaccgtttcttctcctccacaatttc |
21319078 |
T |
|
| Q |
301 |
caacacagctaagcatcccttcactaatcactcctctcctatacaaattgtcttttgtagctatcctaatttaaagcattctccataccaacatagatat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21319077 |
caacacagctaagcatcccttcactaatcactcctctcctatacaaattgtcttttgtagctatcctaatttaaagcattctccataccaacatagatat |
21318978 |
T |
|
| Q |
401 |
ctttgacgggatcgatttattccaagctcttgaccaagacggattacatg----tggcactcccaacattaaagccttgtaagcttccctggcgggatag |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21318977 |
ctttgacgggatcgatttattccaagctcttgaccaagacggattacatgtgtttggcactcccaacattaaagccttgtaagcttccctggcgggatag |
21318878 |
T |
|
| Q |
497 |
atacttgttaatactccacctgtccaaacccatttgtctttctctaaatcattaaattccaccatttctaatctctctttaactcttctcaagacctttt |
596 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21318877 |
atacttgttaatactccacctgtccaaacccatttgtctttctctaaatcattaaattccaccatttctaatctctccttaactcttctcaagacctttt |
21318778 |
T |
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| Q |
597 |
cctcatcatttaagctccctataac |
621 |
Q |
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||||||||||||||||||||||||| |
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| T |
21318777 |
cctcatcatttaagctccctataac |
21318753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1572 (Bit Score: 149; Significance: 2e-78; HSPs: 3)
Name: scaffold1572
Description:
Target: scaffold1572; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 201 - 425
Target Start/End: Original strand, 1044 - 1268
Alignment:
| Q |
201 |
ctaatagcagaaaaccaaggcaggcatttgggttcaagcaccattgggctatgtgattcgagaaatagatgagacaccgtttcttctcctccacaatctc |
300 |
Q |
| |
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|||| ||||||||||||||||| ||| ||||||| ||||||||||||| ||||| | || | |||| ||||||||||||||| ||||||||||||||||| |
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| T |
1044 |
ctaacagcagaaaaccaaggcaagcacttgggtttaagcaccattgggttatgtaactcaaaaaattgatgagacaccgttttttctcctccacaatctc |
1143 |
T |
|
| Q |
301 |
caacacagctaagcatcccttcactaatcactcctctcctatacaaattgtcttttgtagctatcctaatttaaagcattctccataccaacatagatat |
400 |
Q |
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|||||||| |||||||| ||| ||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1144 |
caacacagttaagcatctcttgactaatcactcctctaatatacaaatcatcttttgtagctatcctaatttgaagcattctccataccaacatagatat |
1243 |
T |
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| Q |
401 |
ctttgacgggatcgatttattccaa |
425 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
1244 |
ctttgacgggatcgatttattccaa |
1268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1572; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 14 - 172
Target Start/End: Original strand, 844 - 998
Alignment:
| Q |
14 |
atacctccagcaattataaagagtcctatccaaaatctcagtagctataactgacaactttcaaattactctcccagctgcatggactgaagtagcaaaa |
113 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||| | || ||||| ||||||||||||||||| |
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| T |
844 |
atacctccagcaat-atgaagagtcctatccaaaatctcagtagctataactaacaactttcaaattactcccacaactgcacggactgaagtagcaaaa |
942 |
T |
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| Q |
114 |
acagtacacatcagaaaggtttatacagaaaaatgaagtgcaaaaatatcagaaatcac |
172 |
Q |
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|||||| || |||||| ||||||||||||| | ||||||||||||||||||||| |
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| T |
943 |
acagtatacgctagaaagatttatacagaaaagt---ttgcaaaaatatcagaaatcac |
998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1572; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 519 - 590
Target Start/End: Original strand, 1264 - 1336
Alignment:
| Q |
519 |
tccaaacccatttgtctttctctaaatcattaaattccaccatttct-aatctctctttaactcttctcaaga |
590 |
Q |
| |
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|||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1264 |
tccaaacccatttgcattcctctaaatcattaaattccaccatttctaaatctctctttaactcttctcaaga |
1336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 9e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 7 - 172
Target Start/End: Complemental strand, 37963959 - 37963803
Alignment:
| Q |
7 |
agaacaaatacctccagcaattataaagagtcctatccaaaatctcagtagctataactgacaactttcaaattactctcccagctgcatggactgaagt |
106 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| |||||||||||||||| |
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| T |
37963959 |
agaacaattacctccagcaattata--gagtcctatccaaaatctcagaagctataa-tgacaactttcaaattactcccccaactgcatggactgaagt |
37963863 |
T |
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| Q |
107 |
agcaaaaacagtacacatcagaaaggtttatacagaaaaatgaagtgcaaaaatatcagaaatcac |
172 |
Q |
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||||||| ||||| ||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
37963862 |
agcaaaa----tacacgccag--agatttatacagaaaaatgaagtgcaaaaatatcagaaatcac |
37963803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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