View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_low_42 (Length: 311)
Name: NF5312_low_42
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 11789557 - 11789846
Alignment:
| Q |
1 |
atacacagtcaaagataatactccattcatttcatggctttctagtggggacaaattggtaggtcctcatctcaacgtcactcactcataggtacatttg |
100 |
Q |
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| T |
11789557 |
atacacagtcaaagataatactccattcatttcatggctttctagtggggacaaactggtaggtcctcatctcaacgtcactcactcataggtacatttg |
11789656 |
T |
|
| Q |
101 |
ttacgcaagtttaatggcaagcattacttttgtaatacttgtttgctaagcagaaatatccttcgcccaacttatagattgtgtagaagtgtggtttaat |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11789657 |
ttacgcaagtttaatggcaagcattaattttgtaatacttgtttgttaagcagaaatatccctcgcccaacttatagattgtgtagaagtgtggtttaat |
11789756 |
T |
|
| Q |
201 |
taagttgtaggcacaaattctatggtctagtatgcgctaaacataaaatgcatggaaaactaaaagggggaaagaagaacaatcttatgct |
291 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||| ||||||||||||||||||||||||| |
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| T |
11789757 |
taagctgtaggcacaaattctatggtctagtatgtgctaaacataaagtgtatggaaaactaaaa-ggggaaagaagaacaatcttatgct |
11789846 |
T |
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