View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5312_low_44 (Length: 292)
Name: NF5312_low_44
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_low_44 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 274
Target Start/End: Complemental strand, 1419750 - 1419492
Alignment:
| Q |
9 |
tttatttggccacatacgttcactttgatgtttacatgcaagttaatgtatggtaaccagaaatagcatctggtgtaaatgattctaatttctaaataat |
108 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1419750 |
tttatttggccacatacattcactatgatgtttacatgcaagttaatgtatggtaaccagaaatagcatctggtgtaaatgattctaatttctaaataat |
1419651 |
T |
|
| Q |
109 |
taaccaatatactagtatatatgaatccataatgatctaactcgaccaattttgtaatccagaaccataaaatatacctttaagtatgccatttcctaaa |
208 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
1419650 |
taaccaatata--------tatgaatccataatcatctaactcgaccaattttgaaatccagaaccataaagtatacctttaagtttgccatttcctaaa |
1419559 |
T |
|
| Q |
209 |
ttatatttgtcaaatcatta-aaaatatttgagttgaatcttcacttatttagaattatacgtgatt |
274 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1419558 |
ttatatttgtcaaatcattaaaaaatatttgagttgaatcttcatttatttagaattatacgtgatt |
1419492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University