View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_low_45 (Length: 292)
Name: NF5312_low_45
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 51151793 - 51152082
Alignment:
| Q |
1 |
ttaaagatggggtgtgttgcctcaaaactagaggaagaagaggaagtagtagctatttgtagagagagaaaacgtcagctgaaactagctgtagagaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51151793 |
ttaaagatggggtgtgttgcctcaaaactagaggaagaagaggaagtagtagctatttgtagagagagaaaacgtcagctgaaactagctgtagagaaaa |
51151892 |
T |
|
| Q |
101 |
gatatgcacttgctgaagctcattgtaaatattttcactctttgaatgctgtagctgctgctattaagctttttgttgcaagacattcttcaccttcttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51151893 |
gatatgcacttgctgaagctcattgtaaatattttcactctttgaatgctgtagctgctgctattaagctttttgttgcaagacattcttcaccttcttc |
51151992 |
T |
|
| Q |
201 |
acctttccttataactttccctcctaagggtcttgacccttctccttctcattcatctgctgaaaatgtcataaataaccctatgcttct |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
51151993 |
acctttccttataactttccctcctaagggtcttgacccttctccttctcattcatctgctgaaaatgtcataaataaccctatgtttct |
51152082 |
T |
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