View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5312_low_48 (Length: 286)

Name: NF5312_low_48
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5312_low_48
NF5312_low_48
[»] chr5 (3 HSPs)
chr5 (21-236)||(11334917-11335132)
chr5 (231-277)||(11320765-11320811)
chr5 (64-137)||(11335312-11335384)
[»] chr7 (5 HSPs)
chr7 (170-271)||(26403200-26403301)
chr7 (64-153)||(44338660-44338748)
chr7 (181-251)||(3889163-3889238)
chr7 (170-248)||(10236744-10236822)
chr7 (106-168)||(26403166-26403228)
[»] chr8 (3 HSPs)
chr8 (164-227)||(32041645-32041708)
chr8 (64-153)||(20242337-20242425)
chr8 (64-153)||(20250735-20250823)
[»] chr1 (2 HSPs)
chr1 (33-183)||(9168107-9168258)
chr1 (245-277)||(15629699-15629731)
[»] chr2 (5 HSPs)
chr2 (64-159)||(29409336-29409429)
chr2 (231-277)||(32290876-32290922)
chr2 (153-213)||(1173120-1173178)
chr2 (33-143)||(38583910-38584020)
chr2 (16-87)||(38583931-38584003)
[»] chr3 (2 HSPs)
chr3 (26-87)||(42530806-42530868)
chr3 (239-277)||(50296009-50296047)
[»] chr4 (1 HSPs)
chr4 (170-222)||(7259241-7259292)
[»] scaffold0007 (2 HSPs)
scaffold0007 (164-217)||(14629-14682)
scaffold0007 (66-153)||(14663-14749)
[»] chr6 (2 HSPs)
chr6 (164-217)||(18984209-18984262)
chr6 (66-136)||(18984142-18984211)


Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 11335132 - 11334917
Alignment:
Q  21 tgcatttctcctcttttaattcttctgattgatttcacttcttcccttttgattctttagattgattttgcacttctcccttatggattcttatgattga 120  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11335132 tgcacttctcctcttttaattcttcagattgatttcacttcttcccttttgattctttagattgattttgcacttctcccttatggattcttttgattga 11335033  T
Q  121 ttgaattgcacttctccttattgatttttatgtttggttgctcctctcaattggttcttttgtatggctgtttctctctatcggttcttttgtttggttt 220  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11335032 ttgaattgcacttctccttattgatttttctgtttggttgctcctctctattggttcttttgtatggttgtttctctctatcggttcttttgtttggttt 11334933  T
Q  221 ggtttgattgggttct 236  Q
    ||||||||||||||||    
T  11334932 ggtttgattgggttct 11334917  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 277
Target Start/End: Complemental strand, 11320811 - 11320765
Alignment:
Q  231 ggttcttatgtttagatggttctctctttgagtggttgatgatgatg 277  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  11320811 ggttcttatgtttagatggttctctctttgagtggttgatggtgatg 11320765  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 11335384 - 11335312
Alignment:
Q  64 cccttttgattctttagattgattttgcacttctccct-tatggattcttatgattgattgaattgcacttctcc 137  Q
    ||||||||||||||| ||||||||   ||||||||||  ||| ||||||| |||||||||| |||||||||||||    
T  11335384 cccttttgattcttttgattgatta--cacttctccccctattgattcttctgattgattgcattgcacttctcc 11335312  T

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Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 170 - 271
Target Start/End: Original strand, 26403200 - 26403301
Alignment:
Q  170 attggttcttttgtatggctgtttctctctatcggttcttttgtttggtttggtttgattgggttcttatgtttagatggttctctctttgagtggttga 269  Q
    |||| |||||||||||||||| ||||||| | |  ||||||||||||||||||||||| | ||||||| ||||||||||||||||| ||| | |||||||    
T  26403200 attgattcttttgtatggctgcttctctccaccaattcttttgtttggtttggtttgacttggttcttctgtttagatggttctctatttaactggttga 26403299  T
Q  270 tg 271  Q
    ||    
T  26403300 tg 26403301  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 44338660 - 44338748
Alignment:
Q  64 cccttttgattctttagattgattttgcacttctccc-ttatggattcttatgattgattgaattgcacttctccttattgatttttatgt 153  Q
    ||||||||||||||| ||||||||  |||||| |||| |||||||||||| |||||||  | ||||||||||||  ||||| |||||||||    
T  44338660 cccttttgattcttttgattgatt--gcacttatccccttatggattcttctgattgagagcattgcacttctctctattggtttttatgt 44338748  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 3889163 - 3889238
Alignment:
Q  181 tgtatggctgtttctctctatcggttcttttgtttggtttggtttgattgg-----gttcttatgtttagatggtt 251  Q
    ||||||| || ||||| ||| ||||||||||||||||||||||||| ||||     |||||||||||| |||||||    
T  3889163 tgtatggttgcttctccctaccggttcttttgtttggtttggtttggttggacttagttcttatgtttggatggtt 3889238  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 10236744 - 10236822
Alignment:
Q  170 attggttcttttgtatggctgtttctctctatcggttcttttgtttggtttggtttgattgggttcttatgtttagatg 248  Q
    |||||||||| | ||||| || ||||| ||| |||||||||||||||| || |||||| | ||||||| ||||| ||||    
T  10236744 attggttcttctatatggttgcttctccctagcggttcttttgtttggatttgtttgacttggttcttttgtttggatg 10236822  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 26403166 - 26403228
Alignment:
Q  106 gattcttatgattgattgaattgcacttctccttattgatttttatgtttggttgctcctctc 168  Q
    ||||||| |||||||||| ||||||||||||| |||||||| || ||| ||| |||| |||||    
T  26403166 gattcttttgattgattgcattgcacttctccctattgattcttttgtatggctgcttctctc 26403228  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 32041645 - 32041708
Alignment:
Q  164 ctctcaattggttcttttgtatggctgtttctctctatcggttcttttgtttggtttggtttga 227  Q
    ||||| ||| |||||||||||||| || ||||||||| ||||||||||||||||||| ||||||    
T  32041645 ctctctatttgttcttttgtatggttgattctctctaccggttcttttgtttggtttagtttga 32041708  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 20242337 - 20242425
Alignment:
Q  64 cccttttgattctttagattgattttgcacttctccc-ttatggattcttatgattgattgaattgcacttctccttattgatttttatgt 153  Q
    ||||||||||||||| ||||||||  |||||| |||| |||||||||||| |||||||  | ||||||||||||  ||||| |||||||||    
T  20242337 cccttttgattcttttgattgatt--gcacttatccccttatggattcttctgattgagagcattgcacttctctctattggtttttatgt 20242425  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 153
Target Start/End: Complemental strand, 20250823 - 20250735
Alignment:
Q  64 cccttttgattctttagattgattttgcacttctccc-ttatggattcttatgattgattgaattgcacttctccttattgatttttatgt 153  Q
    ||||||||||||||| ||||||||  |||||| |||| |||||||||||| |||||||  | ||||||||||||  ||||| |||||||||    
T  20250823 cccttttgattcttttgattgatt--gcacttatccccttatggattcttctgattgagagcattgcacttctctctattggtttttatgt 20250735  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 183
Target Start/End: Complemental strand, 9168258 - 9168107
Alignment:
Q  33 cttttaattcttctgattg-atttcacttcttc-ccttttgattctttagattgattttgcacttctccctt-atggattcttatgattgattgaattgc 129  Q
    ||||| |||||||| |||| ||| ||||||| | |||||||||||||  ||| ||||  ||||||||||||| |||||||||| | |||||| | |||||    
T  9168258 cttttcattcttcttattgcattgcacttctcctccttttgattcttctgatcgatt--gcacttctccctttatggattcttctaattgatagcattgc 9168161  T
Q  130 acttctccttattgatttttatgtttggttgctcctctcaattggttcttttgt 183  Q
    |||||| | |||||||| |||||| ||| | || ||||| | ||||||||||||    
T  9168160 acttctacctattgattcttatgtatggctacttctctctactggttcttttgt 9168107  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 277
Target Start/End: Complemental strand, 15629731 - 15629699
Alignment:
Q  245 gatggttctctctttgagtggttgatgatgatg 277  Q
    ||||||||||||||||| |||||||||||||||    
T  15629731 gatggttctctctttgattggttgatgatgatg 15629699  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 64 - 159
Target Start/End: Complemental strand, 29409429 - 29409336
Alignment:
Q  64 cccttttgattctttagattgattttgcacttctcccttatggattcttatgattgattgaattgcacttctccttattgatttttatgtttggtt 159  Q
    |||| |||||||||  ||||||||  |||| |||||| | | ||||||| |||||||||| ||||||||||||| |||||||| || |||||||||    
T  29409429 ccctattgattcttctgattgatt--gcacgtctcccctgttgattcttctgattgattgcattgcacttctccctattgattcttctgtttggtt 29409336  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 32290876 - 32290922
Alignment:
Q  231 ggttcttatgtttagatggttctctctttgagtggttgatgatgatg 277  Q
    ||||||| ||||| ||||||||||||||||| |||||||||||||||    
T  32290876 ggttcttttgtttggatggttctctctttgattggttgatgatgatg 32290922  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 1173178 - 1173120
Alignment:
Q  153 tttggttgctcctctcaattggttcttttgtatggctgtttctctctatcggttcttttgt 213  Q
    |||||||||||||||  ||||||||||||||||| ||| ||||||||| | ||||||||||    
T  1173178 tttggttgctcctct--attggttcttttgtatgactgcttctctctacctgttcttttgt 1173120  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 143
Target Start/End: Complemental strand, 38584020 - 38583910
Alignment:
Q  33 cttttaattcttctgattg-atttcacttctt-cccttttgattctttagattgattttgcacttctcccttatggattcttatgattgattgaattgca 130  Q
    ||||| ||||||||||||| ||| || ||||  ||||||||||||||  ||||||||  |||||||||||   | ||||||| |||||||||| ||||||    
T  38584020 cttttgattcttctgattgcattgcatttctcgcccttttgattcttctgattgatt--gcacttctccccctttgattcttctgattgattgtattgca 38583923  T
Q  131 cttctccttattg 143  Q
    |||||| ||||||    
T  38583922 cttctctttattg 38583910  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 38584003 - 38583931
Alignment:
Q  16 tgcaatgcatttctc-ctcttttaattcttctgattgatttcacttcttcccttttgattctttagattgatt 87  Q
    |||| |||||||||| | ||||| |||||||||||||||| ||||||| ||| ||||||||||  ||||||||    
T  38584003 tgcattgcatttctcgcccttttgattcttctgattgattgcacttctccccctttgattcttctgattgatt 38583931  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 42530806 - 42530868
Alignment:
Q  26 ttctcctcttttaattcttctgattgatttcacttctt-cccttttgattctttagattgatt 87  Q
    |||||| ||||| |||||||||||||||| |||||||| ||||||||||||||  ||||||||    
T  42530806 ttctccccttttgattcttctgattgattgcacttcttccccttttgattcttctgattgatt 42530868  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 50296009 - 50296047
Alignment:
Q  239 tgtttagatggttctctctttgagtggttgatgatgatg 277  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  50296009 tgtttggatggttctctctttgattggttgatgatgatg 50296047  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 7259292 - 7259241
Alignment:
Q  170 attggttcttttgtatggctgtttctctctatcggttcttttgtttggtttgg 222  Q
    |||||||||| ||||||| |||||||| |||||||||||||||| ||||||||    
T  7259292 attggttcttatgtatggttgtttctc-ctatcggttcttttgtctggtttgg 7259241  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 14682 - 14629
Alignment:
Q  164 ctctcaattggttcttttgtatggctgtttctctctatcggttcttttgtttgg 217  Q
    ||||| |||||||||| |||||||||  || |||||| ||||||||||||||||    
T  14682 ctctctattggttcttatgtatggctagttatctctaccggttcttttgtttgg 14629  T

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Target: scaffold0007; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 153
Target Start/End: Complemental strand, 14749 - 14663
Alignment:
Q  66 cttttgattctttagattgattttgcacttctccc-ttatggattcttatgattgattgaattgcacttctccttattgatttttatgt 153  Q
    ||||||||||||  ||||||||  ||||||||||| ||||||||| || |||||||| | ||||||||||||  ||||| || ||||||    
T  14749 cttttgattcttctgattgatt--gcacttctccccttatggatttttctgattgatagcattgcacttctctctattggttcttatgt 14663  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 18984209 - 18984262
Alignment:
Q  164 ctctcaattggttcttttgtatggctgtttctctctatcggttcttttgtttgg 217  Q
    ||||| |||||||||| |||||||||  || |||||| ||||||||||||||||    
T  18984209 ctctctattggttcttgtgtatggctagttatctctaccggttcttttgtttgg 18984262  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 18984142 - 18984211
Alignment:
Q  66 cttttgattctttagattgattttgcacttctccc-ttatggattcttatgattgattgaattgcacttctc 136  Q
    ||||||||||||  ||||||||  ||||||||||| ||||||||| || |||||||| | ||||||||||||    
T  18984142 cttttgattcttctgattgatt--gcacttctccccttatggatttttctgattgatagcattgcacttctc 18984211  T

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