View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_low_5 (Length: 561)
Name: NF5312_low_5
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 27 - 222
Target Start/End: Original strand, 11625971 - 11626165
Alignment:
| Q |
27 |
caataaacacagcgaattgatactcgcagtacatgtttagtatcacagtggattcgttgcagtctatgattttgacaaagtcaccgtgatatcaaacatg |
126 |
Q |
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| T |
11625971 |
caataaacacagcgaattgatactcacggtacatgtttagtatcacagtggattcgttgccgtctatgattt-gacaaagccaccgtgatatcaaacatg |
11626069 |
T |
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| Q |
127 |
cacgatacagaaaacaaaaatgtctccttaatcatataaaaatcttaagtatccataattgcgccagatagcatactttaatttatcaaaaaagtt |
222 |
Q |
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| T |
11626070 |
cacgatacagaaaacaaaaatgtctccttaatcatataaaaatcttaagtatccataattgcgcgagataacatactttaatttatcaaaaaagtt |
11626165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 286 - 424
Target Start/End: Original strand, 11626229 - 11626367
Alignment:
| Q |
286 |
catccatagccgccgcgggcgaaacattttcctcaccagcaatcataagagcttcactctccccaggaaaaagaatcttcttcccaaaaagcttaatttc |
385 |
Q |
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| T |
11626229 |
catccatagccgccgcgggcgaaacattttcctcaccatcaatcataagagcttcaccttccccaggaaaaagaatcttcttcccaaagagcttaatttc |
11626328 |
T |
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| Q |
386 |
agggtccttagtttcaatcatttcttccttcttaagatc |
424 |
Q |
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| T |
11626329 |
agggtccttagtttcaatcatttttttcttcttaagatc |
11626367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 468 - 545
Target Start/End: Original strand, 11626413 - 11626489
Alignment:
| Q |
468 |
gcgcgagacagttattagttaaggtttctgtttgttttgaagaaagagtttcggttttttcgatgttggcaatgaaat |
545 |
Q |
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| T |
11626413 |
gcgcgagacagttattagttaaggtta-tgtttgttttgaagaaagagtttcggttttttcgatgttggcaatgaaat |
11626489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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