View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_low_52 (Length: 274)
Name: NF5312_low_52
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_low_52 |
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| [»] scaffold0011 (2 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 183920 - 183669
Alignment:
| Q |
18 |
aattaagagcaagtttgtctctcatgtgtaaatttacacatgttaataaattcaaagctgttattaatttct--ctctcaaaatttatatactctcacta |
115 |
Q |
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| T |
183920 |
aattaagagcaagtttgtctctcatgtgcaaatttacgcatgttaataaattcaaagctgttattaatttctatctctcaaaatttatatactctcacta |
183821 |
T |
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| Q |
116 |
gtgttttttataagaaatattctcatcttagattcattaataa-taactaatatatttagtttatattaaagatcagatacatcaattatttaagagata |
214 |
Q |
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| T |
183820 |
gtgttttttataagaaatattctc-tcttagattcattaataaataactaatatatttagtttatattaaagatcagatacatcaattatttaagagata |
183722 |
T |
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| Q |
215 |
ttgctagggtcacactttttaatacattcctctaacacacttcaagaataatc |
267 |
Q |
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| T |
183721 |
ttgctagggtcacactttttaatacattcctctaacacacttcaataataatc |
183669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 221809 - 221559
Alignment:
| Q |
18 |
aattaagagcaagtttgtctctcatgtgtaaatttacacatgttaataaattcaaagctgttattaatttct--ctctcaaaatttatatactctcacta |
115 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
221809 |
aattaagagcaagtttgtctctcatgtgcaaatttacgcatgttaataaattcaaagctgttattaatttctatctctcaaaatttatatactctcacta |
221710 |
T |
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| Q |
116 |
gtgttttttataagaaatattctcatcttagattcattaataa-taactaatatatttagtttatattaaagatcagatacatcaattatttaagagata |
214 |
Q |
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| T |
221709 |
gtgtttttta-aagaaatattctc-tcttagattcattaataaataattaatatatttaatttatattaaagatcagatacatcaattatttaagagata |
221612 |
T |
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| Q |
215 |
ttgctagggtcacactttttaatacattcctctaacacacttcaagaataatc |
267 |
Q |
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| T |
221611 |
ttgctagggtcacactttttaatacattcctctaacacacttcaataataatc |
221559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 40364633 - 40364678
Alignment:
| Q |
160 |
aactaatatatttagtttatattaaagatcagatacatcaattatt |
205 |
Q |
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| T |
40364633 |
aactgatatatttggtttatattatagatcaaatacatcaattatt |
40364678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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