View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_low_53 (Length: 268)
Name: NF5312_low_53
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 27929874 - 27929635
Alignment:
| Q |
11 |
aatgacactgaccaccaatactgctgttgtcaatatattctgagcagtgctggttatcatcatcgtcaggggaaaagccttcatgtgaaccatggttttc |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27929874 |
aatgacactgaccaccaatactgctgttgtcaatatattctgagcagtgctggttatcaccatcgtcaggggaaaagccttcatgtgaaccatggttttc |
27929775 |
T |
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| Q |
111 |
caccagttcaaatattaacttatggatacgtggtcgcttgagataagcatccgcaggtggaaaccaatccacattgagctagaaaaattcaacatatgtc |
210 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27929774 |
caccagttcaaatattaacttatggatacgtgttcgcttgagataagcatccgcaggtggaaaccaatccacattgagctagaaaaattcaacatatgtc |
27929675 |
T |
|
| Q |
211 |
aggttaaatccatataagcaaccatatgaatcactaggga |
250 |
Q |
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| T |
27929674 |
atgttaaatccatataagcaactatatgaatcactaggga |
27929635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 28081964 - 28082203
Alignment:
| Q |
11 |
aatgacactgaccaccaatactgctgttgtcaatatattctgagcagtgctggttatcatcatcgtcaggggaaaagccttcatgtgaaccatggttttc |
110 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||| |||| ||||||||| |||||||||| ||||||||||| ||||||||||||||||| |
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| T |
28081964 |
aatgacactgaccaccaatcctgttgttgtcaatatattctgagtagtggtggttatcaccatcgtcaggagaaaagccttcgtgtgaaccatggttttc |
28082063 |
T |
|
| Q |
111 |
caccagttcaaatattaacttatggatacgtggtcgcttgagataagcatccgcaggtggaaaccaatccacattgagctagaaaaattcaacatatgtc |
210 |
Q |
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| T |
28082064 |
cgccagttcaaatattaacttatggatatgtgtttgcttgagataagcatccgtaggtggaaaccagtctacaatgagctagaaaaattcaacatatgtc |
28082163 |
T |
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| Q |
211 |
aggttaaatccatataagcaaccatatgaatcactaggga |
250 |
Q |
| |
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||||||||||||| |||||| ||||||||||||||||||| |
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| T |
28082164 |
aggttaaatccatttaagcagccatatgaatcactaggga |
28082203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 27935945 - 27935716
Alignment:
| Q |
11 |
aatgacactgaccaccaatactgctgttgtcaatatattctgagcagtgctggttatcatcatcgtcaggggaaaagccttcatgtgaaccatggttttc |
110 |
Q |
| |
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|||||||||| |||||||| || ||||||| ||||||||||| |||| ||| |||| ||| |||| ||||||||||||||| || ||||||||| |
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| T |
27935945 |
aatgacactggccaccaat-ct--tgttgtccttatattctgaggagtggcggtcatcaacattgtcatgggaaaagccttcat-tgt--catggttttt |
27935852 |
T |
|
| Q |
111 |
caccagttcaaatattaacttatggatacgtggtcgcttgagataagcatccgcaggtggaaaccaatccacattgagctagaaaaattcaacatatgtc |
210 |
Q |
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|||||| |||| ||||||| |||||||| ||| ||| |||| ||| || ||||||||||||||||| ||||||||||||||||||||| ||| |||||| |
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| T |
27935851 |
caccagctcaactattaacctatggataagtgttcgtttgaaatacgcctccgcaggtggaaaccagtccacattgagctagaaaaatacaaaatatgtt |
27935752 |
T |
|
| Q |
211 |
aggttaaatccatataagcaaccatatgaatcactaggga |
250 |
Q |
| |
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|||| || ||||||| ||| |||||||| |||||||| |
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| T |
27935751 |
aggtcaa----atataagaaactatatgaatgactaggga |
27935716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 46164600 - 46164457
Alignment:
| Q |
90 |
ttcatgtgaaccatggttttccaccagttcaaatattaacttatggatacgtggtcgcttgagataagcatccgcaggtggaaaccaatccacattgagc |
189 |
Q |
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|||| ||||||||||||||||||| |||||| |||| | | | ||||| ||| ||||||||||||||| || ||||| ||||||| |||||||||||| |
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| T |
46164600 |
ttcacgtgaaccatggttttccacgagttcagatatcagcctctggatcagtgttcgcttgagataagcttcagcaggcagaaaccagtccacattgagc |
46164501 |
T |
|
| Q |
190 |
tagaaaaattcaacatatgtcaggttaaatccatataagcaacc |
233 |
Q |
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| ||||||| | | ||||| |||| ||||||||||||| |||| |
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| T |
46164500 |
tggaaaaatactagttatgttaggtcaaatccatataagaaacc |
46164457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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