View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_low_54 (Length: 266)
Name: NF5312_low_54
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 49518062 - 49518278
Alignment:
| Q |
18 |
acaaagatcataataacctccaacacatggatatggttgctgttgacaaagcaagcaaagaagagcttgaactattgcttgctgatgacaaggggataga |
117 |
Q |
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| T |
49518062 |
acaaagatcataataacctccaacacatggatatggttgctgttgacaaagc--------------ttgaactattgcttcctgatgacaaggggataga |
49518147 |
T |
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| Q |
118 |
aactggtctcaagggatataatctaaaatttnnnnnnnggaaggacaaaatggggaaggagaatgttattattgatgagggtaaagtaccaaacagtaca |
217 |
Q |
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| T |
49518148 |
aactggtctcaagggatataatctaaaatttaaaaaaaggaaggacaaaatggggaaggagaatgttattattgatgagggtaaagtaccaaacagtaca |
49518247 |
T |
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| Q |
218 |
tatagtgatgatcaacgttttgttgcacttc |
248 |
Q |
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| T |
49518248 |
tatagtgatgatcaacgttttgttgcacttc |
49518278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 44 - 239
Target Start/End: Original strand, 27747445 - 27747640
Alignment:
| Q |
44 |
atggatatggttgctgttgacaaagcaagcaaagaagagcttgaactattgcttgctgatgacaaggggatagaaactggtctcaagggatataatctaa |
143 |
Q |
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| T |
27747445 |
atggatatagttgctgttgacaaagcaagcaaagaagagcttgagttattgcttgctgatgacaaggcgacagaaactggtctcaaaggatatagtctaa |
27747544 |
T |
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| Q |
144 |
aatttnnnnnnnggaaggacaaaatggggaaggagaatgttattattgatgagggtaaagtaccaaacagtacatatagtgatgatcaacgttttg |
239 |
Q |
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| T |
27747545 |
aatttaaaaaaaggaaggacaaaatgggaaaggagaatgttattattgatgagggtaaagttccaaacagtacatatagtgatgatccacgttttg |
27747640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 38527452 - 38527375
Alignment:
| Q |
64 |
caaagcaagcaaagaagagcttgaactattgcttgctgatgacaaggggatagaaactggtctcaagggatataatct |
141 |
Q |
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| T |
38527452 |
caaagcaagcaaagaagagcttgaactgttgcttgctgatgacaaggggacaggtactggtctcaagggatataatct |
38527375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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