View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_low_56 (Length: 263)
Name: NF5312_low_56
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_low_56 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 21683743 - 21684005
Alignment:
| Q |
1 |
ccaagcagcaattctttttgtttcaggccctcttgtcgatcggatgctagccaagcaaaatgtctttgcatacaaatattctcctctagtcttggtaagt |
100 |
Q |
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| T |
21683743 |
ccaagcagcaattctttttgtttcaggccctcttgtcgatcggatgctaaccaagcaaaatgtctttgcatacaaatattctcctctagtcttggtaagt |
21683842 |
T |
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| Q |
101 |
aatgtcaaatttcaaatcatcaatcctcacgacgtcttatactagttataaacccgtgcaattcaccgatgacatttgacagaatatgactgtatggctc |
200 |
Q |
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| T |
21683843 |
aatgtcaaatttcaaatcatcaatcctcacgacgtcttatactagttataaacccgtgcaattcaccggtgacatttgacagaatatgactgtatgactc |
21683942 |
T |
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| Q |
201 |
acattgtcacttttaaattttcagactttcatcatcatgtcatgtgtgatagctgtttctgtg |
263 |
Q |
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| T |
21683943 |
acattgtcacttttaaattttcagactttcatcatcatgtcatgtgtgatagctgtttctgtg |
21684005 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 40411835 - 40411738
Alignment:
| Q |
1 |
ccaagcagcaattctttttgtttcaggccctcttgtcgatcggatgctagccaagcaaaatgtctttgcatacaaatattctcctctagtcttggtaa |
98 |
Q |
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|||||||||||||||||||||||| |||||| |||| |||| |||| |||| |||| ||| ||||| |||||||||||| || ||||||||||| |
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| T |
40411835 |
ccaagcagcaattctttttgtttctggccctattgtggatcaattgctcaccaaccaaagtgtgtttgcctacaaatattcttctacagtcttggtaa |
40411738 |
T |
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