View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_low_58 (Length: 253)
Name: NF5312_low_58
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_low_58 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 31079325 - 31079565
Alignment:
| Q |
1 |
aaaactgtctggtgtaaaaattcaatcacaggcaccaaatcaagaaatttataattctatagattttaatctcttcttacctccttgatgccaatatata |
100 |
Q |
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| T |
31079325 |
aaaactgtctggtgtaaaaattcaatcacaggcaccaaatcaagaaatttataattctatagattttagtctctt---acctccttgatgccaatatata |
31079421 |
T |
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| Q |
101 |
gtgataaccttttctttcaagtcattaagaggtgtttccatttggttgattaaatttaaagctgaagcttaagttgttgagtgaaggatcatgaatgatt |
200 |
Q |
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| T |
31079422 |
gtgataaccttttctttcaagtcattaagaggtgtttccatttggttgattaaatttaaagcttaagtttaagttggtgagtgaaggaccatgaatgatt |
31079521 |
T |
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| Q |
201 |
ttaaagaaaatgcacacgctatcttacatgtaaactagtattat |
244 |
Q |
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| T |
31079522 |
ttaaagacaatgcacacgctatcttacctgtaaactaatattat |
31079565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 43 - 222
Target Start/End: Original strand, 9164484 - 9164656
Alignment:
| Q |
43 |
agaaatttataattctatagattttaatctcttcttacctccttgatgccaatatatagtgataaccttttctttcaagtcattaagaggtgtttccatt |
142 |
Q |
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| T |
9164484 |
agaaatttataattctatagattttagtctctt---acctccttgatgccaata----gtgataaccttttctttcaagtcattaagtggtgttttcatt |
9164576 |
T |
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| Q |
143 |
tggttgattaaatttaaagctgaagcttaagttgttgagtgaaggatcatgaatgattttaaagaaaatgcacacgctat |
222 |
Q |
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| T |
9164577 |
tggttgattaaatttaaagctgaagcttaagttgctgagtgaaggaccatgaatgattttatagacaatgcacacactat |
9164656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 10672060 - 10672116
Alignment:
| Q |
178 |
tgagtgaaggatcatgaatgattttaaagaaaatgcacacgctatcttacatgtaaa |
234 |
Q |
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| T |
10672060 |
tgagtgaaggaacatgaatggttttatagagaatgcacaagctatcttacctgtaaa |
10672116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 167
Target Start/End: Original strand, 23262159 - 23262224
Alignment:
| Q |
102 |
tgataaccttttctttcaagtcattaagaggtgtttccatttggttgattaaatttaaagctgaag |
167 |
Q |
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| T |
23262159 |
tgataaccttttccttcaagtcattaagaggagttcgaaaatggttgattaagtttaaaactgaag |
23262224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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