View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5312_low_6 (Length: 492)

Name: NF5312_low_6
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5312_low_6
NF5312_low_6
[»] chr5 (6 HSPs)
chr5 (7-259)||(31572246-31572505)
chr5 (346-492)||(31572607-31572753)
chr5 (63-172)||(11492547-11492655)
chr5 (235-341)||(11492679-11492786)
chr5 (358-420)||(11492831-11492893)
chr5 (283-341)||(31572516-31572574)
[»] chr7 (3 HSPs)
chr7 (85-228)||(24730229-24730374)
chr7 (9-59)||(24729939-24729989)
chr7 (382-412)||(22354776-22354806)
[»] chr3 (1 HSPs)
chr3 (120-172)||(27057828-27057880)
[»] chr1 (1 HSPs)
chr1 (120-172)||(39833594-39833646)
[»] chr2 (1 HSPs)
chr2 (115-222)||(4272966-4273075)


Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-107; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 7 - 259
Target Start/End: Original strand, 31572246 - 31572505
Alignment:
Q  7 ggagcacagatgcatacagaacacacaacttcatgcattccaattattgaaaataaagaattcatggttac-------aatacataagaaactacacaat 99  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||       ||||||||||||||||||||||    
T  31572246 ggagcacagatgcatactgaacacacaacttcatgcattccaattattgaaaataaataattcatggttacaacttacaatacataagaaactacacaat 31572345  T
Q  100 atgaagaatcatcgcacacaagcttattcttgttcggaaatgcactccacccagttatgagcaaatgtctctggttgcacttctcccacgaacagaataa 199  Q
    |||||| |||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31572346 atgaagcatcatcgcacacaagcttattcttgttcagaaatttactccacccagttatgagcaaatgtctctggttgcacttctcccacgaacagaataa 31572445  T
Q  200 atcaaacccccaagcagtcaacgggcaacatactataatgccaagtaatataagtgactt 259  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||    
T  31572446 atcaaacccccaagcagtcaacgggcaatttactataatgccaagtaatataattgactt 31572505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 346 - 492
Target Start/End: Original strand, 31572607 - 31572753
Alignment:
Q  346 aaaagcgtatctgatgtctaacacgtgtaagtgtttgacaccaacataacaccgacacatatgattatattgaataaatgtattacaaaaatgttctatg 445  Q
    ||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| || |    
T  31572607 aaaagtgtgtctgatgtctaacacgtgtaagtgtttgacaccaacacaacaccgacacatgtgattatattgaataaatgtattacaaaaatgttttaag 31572706  T
Q  446 gtgagtgttgctaaaacacataaatgtagtagtgagcaagcattcac 492  Q
     ||||||||||||||||||||||||||||||||||||||||||||||    
T  31572707 atgagtgttgctaaaacacataaatgtagtagtgagcaagcattcac 31572753  T

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Target: chr5; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 63 - 172
Target Start/End: Original strand, 11492547 - 11492655
Alignment:
Q  63 agaattcatggttacaatacataagaaactacacaatatgaagaatcatcgcacacaagcttattcttgttcggaaatgcactccacccagttatgagca 162  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||  |||||||||||| |||||||| | ||||||||||||||||||||||||||    
T  11492547 agaattca-ggttacaatacataagaaactacacaatatgaagcatcactgcacacaagctttttcttgtttgaaaatgcactccacccagttatgagca 11492645  T
Q  163 aatgtctctg 172  Q
    ||||||||||    
T  11492646 aatgtctctg 11492655  T

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Target: chr5; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 235 - 341
Target Start/End: Original strand, 11492679 - 11492786
Alignment:
Q  235 taatgccaagtaatataagtgacttaaatcctagatacataa-agtaaataatgctcagaagagatttcataagaaataagcatacatctttatccatac 333  Q
    ||||||||||||||||||||||||||||||| ||||||| |  ||||| ||||||||| ||||||||||||||| ||||| |||||  ||||||||||||    
T  11492679 taatgccaagtaatataagtgacttaaatccaagatacagaggagtaactaatgctcataagagatttcataagcaataaacatactcctttatccatac 11492778  T
Q  334 tcctaaaa 341  Q
    ||||||||    
T  11492779 tcctaaaa 11492786  T

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Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 358 - 420
Target Start/End: Original strand, 11492831 - 11492893
Alignment:
Q  358 gatgtctaacacgtgtaagtgtttgacaccaacataacaccgacacatatgattatattgaat 420  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  11492831 gatgtccaacacgtgtaagtgtttgacaccaacgtaacaccgacacatgtgattatattgaat 11492893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 31572516 - 31572574
Alignment:
Q  283 taatgctcagaagagatttcataagaaataagcatacatctttatccatactcctaaaa 341  Q
    |||||| ||||| |||||||||||| ||||| ||||| |||||||||||||||||||||    
T  31572516 taatgcgcagaaaagatttcataagcaataaacatacttctttatccatactcctaaaa 31572574  T

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Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 85 - 228
Target Start/End: Complemental strand, 24730374 - 24730229
Alignment:
Q  85 aagaaactacacaatatgaagaatcatcgcacacaagcttattcttgttcggaaatgcactccacccagttatgagcaaatgtctc--tggttgcacttc 182  Q
    ||||||||||||||||| ||| ||||  || ||||||| | |||||||||| ||||||||||||||||||||||||||||||||||  | | ||| || |    
T  24730374 aagaaactacacaatattaagcatcactgctcacaagcattttcttgttcgcaaatgcactccacccagttatgagcaaatgtctctatagctgctctgc 24730275  T
Q  183 tcccacgaacagaataaatcaaacccccaagcagtcaacgggcaac 228  Q
     | |||||||||| ||||||||||||||| ||||||||| ||||||    
T  24730274 gcacacgaacagagtaaatcaaacccccaggcagtcaacaggcaac 24730229  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 24729989 - 24729939
Alignment:
Q  9 agcacagatgcatacagaacacacaacttcatgcattccaattattgaaaa 59  Q
    ||||||||||||||||||||||||| |||||||||||| ||||| ||||||    
T  24729989 agcacagatgcatacagaacacacagcttcatgcattcaaattactgaaaa 24729939  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 412
Target Start/End: Original strand, 22354776 - 22354806
Alignment:
Q  382 gacaccaacataacaccgacacatatgatta 412  Q
    |||||||||||||||||||||||||||||||    
T  22354776 gacaccaacataacaccgacacatatgatta 22354806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 27057828 - 27057880
Alignment:
Q  120 agcttattcttgttcggaaatgcactccacccagttatgagcaaatgtctctg 172  Q
    ||||| || ||||||| |||||||||||||||| |||||||||||||||||||    
T  27057828 agcttttttttgttcgcaaatgcactccacccaattatgagcaaatgtctctg 27057880  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 39833646 - 39833594
Alignment:
Q  120 agcttattcttgttcggaaatgcactccacccagttatgagcaaatgtctctg 172  Q
    ||||| || ||||||| |||||||||||||||| |||||||||||||||||||    
T  39833646 agctttttattgttcgcaaatgcactccacccaattatgagcaaatgtctctg 39833594  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 222
Target Start/End: Original strand, 4272966 - 4273075
Alignment:
Q  115 acacaagcttattcttgttcggaaatgcactccacccagttatgagcaaatgtctc--tggttgcacttctcccacgaacagaataaatcaaacccccaa 212  Q
    |||||||||| ||||| ||   ||||||||||||||||||| |||||||||| |||  ||| ||| || |||| ||||||| |  |||||||||||| ||    
T  4272966 acacaagcttcttcttattaacaaatgcactccacccagttgtgagcaaatgcctccttggctgccctgctccaacgaacacaggaaatcaaacccctaa 4273065  T
Q  213 gcagtcaacg 222  Q
    ||| ||||||    
T  4273066 gcattcaacg 4273075  T

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