View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_low_60 (Length: 252)
Name: NF5312_low_60
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 32536228 - 32536449
Alignment:
| Q |
1 |
tgacatgttataatcaaaatattgttaagtcgcaaatagacaattcaattgaggaggtgagtgacaatgaaagagttctaactagaatatttgagactca |
100 |
Q |
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| T |
32536228 |
tgacatgttataatcaaaatattgttaagtcgcaaatagacaattcaattgaggaggtgagtgacaatgaaagagttctaactagaatatttgagactca |
32536327 |
T |
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| Q |
101 |
aactttgaagacaaacacaatctactaagttgttaaatatattattcgtaaaaaacatgtttcaactaaaatttagagattacaatatatataaggcata |
200 |
Q |
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| T |
32536328 |
aactttgaagacaaacacaatctactaagttgttaaatatgttattcgtaaaaaacatgtttaaactaaaatttagagattacaatatatatatggcata |
32536427 |
T |
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| Q |
201 |
taaagtgagaatgcattatgta |
222 |
Q |
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| T |
32536428 |
taaagtgagaatgcattatgta |
32536449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 185
Target Start/End: Complemental strand, 7466973 - 7466817
Alignment:
| Q |
24 |
gttaagtcgcaaatagacaattcaattgaggaggtgagtgacaatgaaa--gagttctaactagaatatttgagactcaaactttgaagacaaacacaat |
121 |
Q |
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| T |
7466973 |
gttaaggcgcaaatagacaattcaattaaggagttaagaaataataaaaaagagttctaactagaatatttgagactcaaac--cgaagagaaacacaat |
7466876 |
T |
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| Q |
122 |
ctactaagttgttaaatatattattcgt-aaaaaacatgtttcaactaaaatttagagattacaa |
185 |
Q |
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| T |
7466875 |
ccac------gttaaatatgttatccataaaaaaacatatttcaactaaaatatagggattacaa |
7466817 |
T |
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