View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_low_64 (Length: 248)
Name: NF5312_low_64
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_low_64 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 28690619 - 28690861
Alignment:
| Q |
1 |
ggagtagcataggaacttggaccctttttcccccaaaatagcagccaacctaagctcaagttgaacccatattcttggaataaaggtgggtcaatttc-- |
98 |
Q |
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| T |
28690619 |
ggagaagcagaggaacttggaccctttttcccccaaaatagcagccaacctaagctcaagttgaacccatattcttggaataaaggtgggtcaatttcaa |
28690718 |
T |
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| Q |
99 |
-aaattgataactttcacaatgcattgcaataatggtagttcaattcattgtaaatttgttaatttgagataaactttgtatatcctgtacaattttaaa |
197 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
28690719 |
taaattgataactttcacaatgcattgcaaaaatggtagttcaattcattgta--------aatttgagataaactttgtatatcttgtacaattttaaa |
28690810 |
T |
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| Q |
198 |
aataaactaaatcttttctacagctgcaaatcttttgtttcttgaatcccc |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28690811 |
aataaactaaatcttttctacagctgcaaatcttttgtttcttgaatcccc |
28690861 |
T |
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