View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5312_low_7 (Length: 476)

Name: NF5312_low_7
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5312_low_7
NF5312_low_7
[»] chr2 (2 HSPs)
chr2 (312-471)||(29682859-29683018)
chr2 (314-422)||(10994582-10994690)
[»] chr8 (3 HSPs)
chr8 (316-391)||(2074660-2074735)
chr8 (327-388)||(26000271-26000332)
chr8 (425-468)||(2074563-2074607)
[»] chr1 (2 HSPs)
chr1 (312-386)||(51871361-51871435)
chr1 (312-426)||(3227473-3227587)
[»] chr3 (1 HSPs)
chr3 (312-386)||(1045237-1045309)
[»] chr7 (2 HSPs)
chr7 (323-388)||(45240140-45240206)
chr7 (312-415)||(12258533-12258636)


Alignment Details
Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 312 - 471
Target Start/End: Original strand, 29682859 - 29683018
Alignment:
Q  312 gtggggttttatctccccttcctttccggtgtggctttcgggattttctttttgttctttctttcttgcaggtgttgttgggcttgctgttgtgattggc 411  Q
    |||||||| ||||| | ||||||| ||| ||||||||| ||| ||||||| |||||||||||||||||||||||| | ||||||| |||||||| |||||    
T  29682859 gtggggttgtatcttcacttccttcccgatgtggcttttggggttttcttgttgttctttctttcttgcaggtgtcgctgggcttactgttgtggttggc 29682958  T
Q  412 tctcagctttttggtgctccattttggggtcttttgggtgtgcatttggctccgtctgtg 471  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29682959 tctcagctctttggtgctccattttggggtcttttgggtgtgcctttggctccgtctgtg 29683018  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 422
Target Start/End: Original strand, 10994582 - 10994690
Alignment:
Q  314 ggggttttatctccccttcctttccggtgtggctttcgggattttctttttgttctttctttcttgcaggtgttgttgggcttgctgttgtgattggctc 413  Q
    |||||| |||||||||||| || ||||||||||||  ||| ||||||| ||||||||| ||||||||| |||||| | | |||| ||||||| || ||||    
T  10994582 ggggttgtatctccccttcattcccggtgtggcttctggggttttcttgttgttctttgtttcttgcaagtgttgcttgccttgttgttgtgcttagctc 10994681  T
Q  414 tcagctttt 422  Q
    || ||||||    
T  10994682 tcggctttt 10994690  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 316 - 391
Target Start/End: Complemental strand, 2074735 - 2074660
Alignment:
Q  316 ggttttatctccccttcctttccggtgtggctttcgggattttctttttgttctttctttcttgcaggtgttgttg 391  Q
    |||| ||||||||||||||| ||||||||||||||| | ||||||| |||| ||||||||||||||||||||||||    
T  2074735 ggttgtatctccccttccttcccggtgtggctttcgaggttttcttgttgtcctttctttcttgcaggtgttgttg 2074660  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 327 - 388
Target Start/End: Original strand, 26000271 - 26000332
Alignment:
Q  327 cccttcctttccggtgtggctttcgggattttctttttgttctttctttcttgcaggtgttg 388  Q
    ||||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||||||||    
T  26000271 cccttccttcccggtgtggcttttggggttttcttgttgttctttctttcttgcaggtgttg 26000332  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 468
Target Start/End: Complemental strand, 2074607 - 2074563
Alignment:
Q  425 gtgctccattttggggt-cttttgggtgtgcatttggctccgtct 468  Q
    ||||||| ||||||||| ||||||||||||| |||||||||||||    
T  2074607 gtgctccgttttggggttcttttgggtgtgcctttggctccgtct 2074563  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 312 - 386
Target Start/End: Original strand, 51871361 - 51871435
Alignment:
Q  312 gtggggttttatctccccttcctttccggtgtggctttcgggattttctttttgttctttctttcttgcaggtgt 386  Q
    |||||||| ||||||||||||||| |  ||||||||| |||| ||||||| ||||||||| ||||||||| ||||    
T  51871361 gtggggttgtatctccccttccttcctagtgtggcttccggggttttcttgttgttctttgtttcttgcatgtgt 51871435  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 426
Target Start/End: Complemental strand, 3227587 - 3227473
Alignment:
Q  312 gtggggttttatctccccttcctttccggtgtggctttcgggattttctttttgttctttctttcttgcaggtgtt-gttgggcttgctgttgtgattgg 410  Q
    |||||||  ||||||||||||||| |  |||||||||||  | ||||||| ||||| ||| |  |||||||||||| |||||||||||||||||| || |    
T  3227587 gtggggtcgtatctccccttccttcctagtgtggctttcaagtttttcttgttgttttttgta-cttgcaggtgtttgttgggcttgctgttgtggttag 3227489  T
Q  411 ctctcagctttttggt 426  Q
    || |  ||||||||||    
T  3227488 ctattggctttttggt 3227473  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 386
Target Start/End: Complemental strand, 1045309 - 1045237
Alignment:
Q  312 gtggggttttatctccccttcctttccggtgtggctttcgggattttctttttgttctttctttcttgcaggtgt 386  Q
    |||||||| |||||||  |||||||||||| |||||| |||| ||||||| ||||| ||| ||||||||||||||    
T  1045309 gtggggttgtatctcc--ttcctttccggtttggcttccggggttttcttgttgttgtttgtttcttgcaggtgt 1045237  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 388
Target Start/End: Original strand, 45240140 - 45240206
Alignment:
Q  323 tctccccttcctttccggtgtggctttcgggatttt-ctttttgttctttctttcttgcaggtgttg 388  Q
    ||||||||||||| |||||||||||| |  |||||| ||| ||||||||| ||||||||||||||||    
T  45240140 tctccccttccttcccggtgtggcttccaagatttttcttcttgttctttgtttcttgcaggtgttg 45240206  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 415
Target Start/End: Original strand, 12258533 - 12258636
Alignment:
Q  312 gtggggttttatctccccttcctttccggtgtggctttcgggattttctttttgttctttctttcttgcaggtg-ttgttgggcttgctgttgtgattgg 410  Q
    |||||||  |||||||| |||||||||||||| || || ||| ||||||| |||||||||  | |||||||||| ||||||||||| ||| | || ||||    
T  12258533 gtggggtcgtatctcccattcctttccggtgttgccttggggtttttcttgttgttcttt-gtgcttgcaggtgtttgttgggcttactgctttggttgg 12258631  T
Q  411 ctctc 415  Q
    |||||    
T  12258632 ctctc 12258636  T

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