View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_low_82 (Length: 227)
Name: NF5312_low_82
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_low_82 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 13923762 - 13923535
Alignment:
| Q |
1 |
aattaattccaataagaaatttggtacaatatgaaatccacttgatactctactatcagtctagaattggttggcctagtttggttaatttcaagtagtt |
100 |
Q |
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| T |
13923762 |
aattaattccaataagaaatttggtacaatatgaaatccacttgatactctactatcagtgtagaattggttggcctagtttggttaatttcaagtagtt |
13923663 |
T |
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| Q |
101 |
gaaaatgatcgatctagacattaatgaatggaagaaaaaccccaacatatttttagtgaacctcttctagttgcaactagctaggaaatttccttcaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13923662 |
gaaaatgatcgatctagacattaatgaatggaagaaaaaccccaacatatttttagtgaacctcttctagttgcaactagctaggaaatttccttcaatc |
13923563 |
T |
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| Q |
201 |
taaatag-ccaattgctgtgtagtgtac |
227 |
Q |
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||||||| |||||||||||||||||||| |
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| T |
13923562 |
taaatagcccaattgctgtgtagtgtac |
13923535 |
T |
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