View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_low_84 (Length: 223)
Name: NF5312_low_84
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_low_84 |
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Alignment Details
Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 26578672 - 26578746
Alignment:
| Q |
15 |
acatcatctatagtgaccaaatcactcccatcgccttctatataaagctctcacacacaccc--catttcctcat |
87 |
Q |
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| T |
26578672 |
acatcatctatagtgaccaaatcactcccatcgccctctatataaagctctcacacacacacaccatttcctcat |
26578746 |
T |
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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 26578826 - 26578866
Alignment:
| Q |
167 |
tgtctatcattccaagtgtgttcggaaccggacgaagaagc |
207 |
Q |
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| T |
26578826 |
tgtctatcattccaagtgtcttcggaaccggacgaagaagc |
26578866 |
T |
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