View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_low_88 (Length: 217)
Name: NF5312_low_88
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_low_88 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 21684207 - 21683991
Alignment:
| Q |
1 |
tctttttgttttcctgagtgcagaaataggaatacaaacccattccaaaaactgctactagtattccaataatgttcctttctgtgaaaggatcatggag |
100 |
Q |
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| T |
21684207 |
tctttttgttttcctgagtgcagaaataggaatacaaacccattccaaacactgctactagtattccaataatgttcctttcagtgaaaggatcatggag |
21684108 |
T |
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| Q |
101 |
caatgtgtagccaaatcctagaacaagacaagtcttgaggtggcccaacacttgatatgttactggagatgtttttcctattactagaaaagtgctaaag |
200 |
Q |
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| T |
21684107 |
caatgtgtagccaaatcctagaacaagacaagtcttgaggtggcccaacacttgatacgttactggagatgtttttcctattactagaaaagtgctaaag |
21684008 |
T |
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| Q |
201 |
ttcacagaaacagctat |
217 |
Q |
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| T |
21684007 |
ttcacagaaacagctat |
21683991 |
T |
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Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 40411389 - 40411583
Alignment:
| Q |
20 |
gcagaaataggaatacaaacccattccaaaaactgctactagtattccaataatgttcctttctgtgaaaggatcatggagcaatgtgtagccaaatcct |
119 |
Q |
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| T |
40411389 |
gcagaaataagagtacaaaaccattccaaaaatagcaatcaatattccaataatgttccttccattgaaggggtcatggagcaatgtgtagccaaagcct |
40411488 |
T |
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| Q |
120 |
agaacaagacaagtcttgaggtggcccaacacttgatatgttactggagatgtttttcctattactagaaaagtgctaaagttcacagaaacagc |
214 |
Q |
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| T |
40411489 |
ataacaaggcatgttttgaggtggcctagtacttgataagttacaggtgatgttttgccaataactagaaacgtgctgaagttcacagaaacagc |
40411583 |
T |
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