View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5312_low_93 (Length: 206)
Name: NF5312_low_93
Description: NF5312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5312_low_93 |
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Alignment Details
Target: chr1 (Bit Score: 111; Significance: 3e-56; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 4015343 - 4015229
Alignment:
| Q |
8 |
gacatcatcagatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcctgttgttcttgaccacgaacatgtgtgtttgagt |
107 |
Q |
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| T |
4015343 |
gacaacatcagatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcctgttgttcttgaccacgaacatgtgtgtttgagt |
4015244 |
T |
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| Q |
108 |
ggtactataaactgg |
122 |
Q |
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| T |
4015243 |
ggtactataaactgg |
4015229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 4570658 - 4570741
Alignment:
| Q |
39 |
ggtgttgatgtttggagaaacattgaaagttttcctgttgttcttgaccacgaacatgtgtgtttgagtggtactataaactgg |
122 |
Q |
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| T |
4570658 |
ggtgatgatgtttggagaaatattgaaagttttcctactgttcttggccacaaacctgtgtatttgagtggcactgtgaactgg |
4570741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 21855786 - 21855725
Alignment:
| Q |
16 |
cagatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcctgtt |
77 |
Q |
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| T |
21855786 |
cagaggtgagagttatcaacatgggtgatgatgtttggagaaacatcgaaagttttcctgtt |
21855725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 4017139 - 4017083
Alignment:
| Q |
15 |
tcagatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagtttt |
71 |
Q |
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| T |
4017139 |
tcagaggtgaaagttctcaatttgggtgatgatgtttggagaaatattgacagtttt |
4017083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 24331302 - 24331241
Alignment:
| Q |
16 |
cagatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcctgtt |
77 |
Q |
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| T |
24331302 |
cagaggtgagagttatcaacatgggtgatgatgtttggagaaacatcgaaagttttcctgtt |
24331241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 29866911 - 29866968
Alignment:
| Q |
18 |
gatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcctg |
75 |
Q |
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| T |
29866911 |
gatgtgagagttctcaatttcggtgatgatcgttggagaaatattgaaagttttcctg |
29866968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 29880931 - 29880984
Alignment:
| Q |
21 |
gtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcct |
74 |
Q |
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| T |
29880931 |
gtgagagttctcaatcttggtgatgatgtttggagaaatattgaaagttttcct |
29880984 |
T |
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