View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5313-Insertion-1 (Length: 1095)
Name: NF5313-Insertion-1
Description: NF5313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5313-Insertion-1 |
 | |
|
| [»] scaffold0649 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 609; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 221 - 1001
Target Start/End: Complemental strand, 20597514 - 20596727
Alignment:
| Q |
221 |
tgttgggtaacacaccatccttcaacattgcagctttctgcctgtttgcttcccatctctccatcaagtacactctgatgtcctcacacatggtcaccac |
320 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20597514 |
tgttgggtaacacaccatcctccaacattgcagctttctgcctgtttgcttcccatctctccatcaggtacactctgatgtcctcacacatggtcaccac |
20597415 |
T |
|
| Q |
321 |
tggcttacctctagctatgataatagttgagttaaatgtctctgacatgttattcaccaaagtgtcacattttttatcaccagtgaatttgtgtttgctc |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20597414 |
tggcttacctctagctatgataatagttgagttaaatgtctctgacatgttattcaccagagtgtcacatttttgatcaccagtgaatttgtgtttgctc |
20597315 |
T |
|
| Q |
421 |
caatgcttggcaggaatatttttgagatactcatatgctccttcacttatatccttgatctctttcatggcatcattgaatgcattttcataggttgctt |
520 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
20597314 |
caatgcttggcatgaatgtttttgagatactcatatgctccttcccttatatccttgatctctttcatggcatcaatgaatgcattttcataagttgctt |
20597215 |
T |
|
| Q |
521 |
ttgctgccctccacatcaactcctttaactttttcccaggatgnnnnnnnnctaaagttattgtacagatgcctgacacaaaacctttgatcaacatcag |
620 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20597214 |
ttgctgccctccacatcaactcctttaactttttcccaggatg-ttttttcctaaagttattgtacagatgcctgacacaaaacctttgatcaacatcag |
20597116 |
T |
|
| Q |
621 |
gtagtaactcatccatagccggcaaaagaccctgcaatgtaattgtgattgttaaataaacag--nnnnnnngtctaacatttaaaaagacaataatgaa |
718 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
20597115 |
gtagtaactcatccatagtcggcaaaagaccctgcaatgtaattgtgattgttaaataaacaggaaaaaaaagtctaacaagtaaaaagacaataatgaa |
20597016 |
T |
|
| Q |
719 |
gtaaaactaccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaaccacttctaaga |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| |||| |
|
|
| T |
20597015 |
gtaaaactaccttttgttggtcactaataaaagtgtaagtcttacatagtcttggtccacctaaatcagcaattagtagctccaagaaccaattccaaga |
20596916 |
T |
|
| Q |
819 |
ttccttggtctctccttccaccacagcataagctattggaagcatctgatcattaggatcccttccaatagcagcgagcaacttcccaccatagtaaccc |
918 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
20596915 |
ttccttggtctctccttccaccacagcataagctattggaagcatctgatcattaggatcccttccaatagcagcgagcaacatcccaccatagtaaccc |
20596816 |
T |
|
| Q |
919 |
ttcaggaaac-accatc-agcccaat-acactcctacagtt-aaaaaactatccttgcaccctttgaa--caatatacagtctttcaaa |
1001 |
Q |
| |
|
|||||||||| |||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
20596815 |
ttcaggaaacaaccatcaagcccaataacactcctacagttaaaaaaactatccttgcaccctttgaaacaaatatatagtctttcaaa |
20596727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 7 - 211
Target Start/End: Complemental strand, 20597819 - 20597615
Alignment:
| Q |
7 |
aatatgttcatgtcgaacttcttcatacatgaaatagcatgacagcagggcaatcctattagtagccatttcctgcagtcacaagaccatctttgcaggt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20597819 |
aatatgttcatgtcgaacttcttcatacatgaaatagcatgacagcagggcaatcctgttagtagccatttcctgcagtcacaagaccatctttgcaggt |
20597720 |
T |
|
| Q |
107 |
tgacatgaaacttgtcaccacttaaagaaacatgcctaacttcataatcaaactcatttgcacgcctacaaatataacatttcataaaattaatatcact |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20597719 |
tgacatgaaacttgtcaccacttaaagaaacatgcctaacttcataatcaaactcatttgcacgcctacaaatataacatttcataaaattaatatcact |
20597620 |
T |
|
| Q |
207 |
actaa |
211 |
Q |
| |
|
||||| |
|
|
| T |
20597619 |
actaa |
20597615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 726 - 931
Target Start/End: Original strand, 3814478 - 3814683
Alignment:
| Q |
726 |
taccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaaccacttctaagattccttg |
825 |
Q |
| |
|
|||||||||||| |||||||| || ||||||||||| || | ||| ||||||||||| ||| |||| | || ||||| ||||||||| | |||||||| |
|
|
| T |
3814478 |
taccttttgttgatcactaatgaaggtgtaagtcttgcataatctgggtccacctaagtcaccaatcaagagttccaaaaaccacttccatgattccttt |
3814577 |
T |
|
| Q |
826 |
gtctctccttccaccacagcataagctattggaagcatctgatcattaggatcccttccaatagcagcgagcaacttcccaccatagtaacccttcagga |
925 |
Q |
| |
|
|| || ||||| |||||| || | ||||||||||||||||| ||||| || ||||||||||| ||||| ||||||| |||||||||||||||||||| || |
|
|
| T |
3814578 |
gtttcaccttcaaccacaacaaatgctattggaagcatctggtcatttgggtcccttccaattgcagctagcaactgcccaccatagtaacccttcaaga |
3814677 |
T |
|
| Q |
926 |
aacacc |
931 |
Q |
| |
|
| |||| |
|
|
| T |
3814678 |
agcacc |
3814683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 463 - 561
Target Start/End: Original strand, 3814207 - 3814305
Alignment:
| Q |
463 |
tcacttatatccttgatctctttcatggcatcattgaatgcattttcataggttgcttttgctgccctccacatcaactcctttaactttttcccagga |
561 |
Q |
| |
|
||||| || ||||||||||||||||| ||||| ||||||||| ||||| |||| |||||||||||||||||| || ||||| ||||| || |||||| |
|
|
| T |
3814207 |
tcactaatctccttgatctctttcattacatcaaggaatgcattctcataagttgattttgctgccctccacattaattccttcaacttctttccagga |
3814305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 591; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 221 - 1001
Target Start/End: Complemental strand, 8698514 - 8697728
Alignment:
| Q |
221 |
tgttgggtaacacaccatccttcaacattgcagctttctgcctgtttgcttcccatctctccatcaagtacactctgatg-tcctcacacatggtcacca |
319 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
8698514 |
tgttgggtaacacaccatcctccaacattgcagctttctgcctgtttgcttcccatctctccatcaggtacactctgatggtcctcacacatggtcacca |
8698415 |
T |
|
| Q |
320 |
ctggcttacctctagctatgataatagttgagttaaatgtctctgacatgttattcaccaaagtgtcacattttttatcaccagtgaatttgtgtttgct |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8698414 |
ctggcttacctctagctatgataatagttgagttaaatgtctctgacatgttattcaccagagtgtcacattttggatcaccagtgaatttgtgtttgct |
8698315 |
T |
|
| Q |
420 |
ccaatgcttggcaggaatatttttgagatactcatatgctccttcacttatatccttgatctctttcatggcatcattgaatgcattttcataggttgct |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8698314 |
ccaatgcttggcaggaatatttttgagatactcatatgctccttcacttatatccttgatatctttcatggcatcattgaatgcattttcatatgttgct |
8698215 |
T |
|
| Q |
520 |
tttgctgccctccacatcaactcctttaactttttcccaggatgnnnnnnnnctaaagttattgtacagatgcctgacacaaaacctttgatcaacatca |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8698214 |
tttgctgccctccacatcaactcctttaactttttcccaggatg-ttttttcctaaagttattgtacagatgccttacacaaaacctttgatcaacatca |
8698116 |
T |
|
| Q |
620 |
ggtagtaactcatccatagccggcaaaagaccctgcaatgtaattgtgattgttaaataaacagnnnnnnngtctaacatttaaaaagacaataatgaag |
719 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
8698115 |
ggcagtaactcatccatagctggcaaaagaccctgcaatgtaattgtgattgttaattaaacagaaaaaaagtctaacatgtaaaaagacaataatgaag |
8698016 |
T |
|
| Q |
720 |
taaaactaccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaaccacttctaagat |
819 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
8698015 |
taaaactaccttttgctggtcactaataaaagtgtaagtcttacacaatcttggtccacctaaatcaccaattagaagctccaagaaccacttccaagat |
8697916 |
T |
|
| Q |
820 |
tccttggtctctccttccaccacagcataagctattggaagcatctgatcattaggatcccttccaatagcagcgagcaacttcccaccatagtaaccct |
919 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
8697915 |
tctttggtctctccttccaccacagcataagctattggaagcatctgatcattaggatcccttccaatagcagcaagcaacatcccaccatagtaaccct |
8697816 |
T |
|
| Q |
920 |
tcaggaaac-accatc-agcccaat-acactcctacagtt-aaaaaactatccttgcaccctttgaa--caatatacagtctttcaaa |
1001 |
Q |
| |
|
||||||||| |||||| ||||| || |||||||||||||| ||||||||||| ||||||||||| || |||||| ||||||||||| |
|
|
| T |
8697815 |
tcaggaaacaaccatcaagcccgataacactcctacagttaaaaaaactatctttgcaccctttcaaacaaatatatagtctttcaaa |
8697728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 7 - 209
Target Start/End: Complemental strand, 8698820 - 8698618
Alignment:
| Q |
7 |
aatatgttcatgtcgaacttcttcatacatgaaatagcatgacagcagggcaatcctattagtagccatttcctgcagtcacaagaccatctttgcaggt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8698820 |
aatatgttcatgtcgaacttcttcatacatgaaatagcatgacagcagggcaatcctgttagtaaccatttcctgcagtcacaagaccatctttgcaggt |
8698721 |
T |
|
| Q |
107 |
tgacatgaaacttgtcaccacttaaagaaacatgcctaacttcataatcaaactcatttgcacgcctacaaatataacatttcataaaattaatatcact |
206 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
8698720 |
tgacatgaaacttgtgaccagttaaagaaacatgtctaacttcataatcaaactcatttgcacgcctacaaatataacatttcataaaattagtatcgct |
8698621 |
T |
|
| Q |
207 |
act |
209 |
Q |
| |
|
||| |
|
|
| T |
8698620 |
act |
8698618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 726 - 892
Target Start/End: Complemental strand, 11385888 - 11385722
Alignment:
| Q |
726 |
taccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaaccacttctaagattccttg |
825 |
Q |
| |
|
||||||||| ||||||||||| | ||||||||| || || ||||||| ||||| ||||||||||| |||| ||||| |||||| || | ||||| ||| |
|
|
| T |
11385888 |
taccttttgctggtcactaattatagtgtaagtattgcaaagtcttgtgccacccaaatcagcaatgagaatctccagaaaccacatccatgattctttg |
11385789 |
T |
|
| Q |
826 |
gtctctccttccaccacagcataagctattggaagcatctgatcattaggatcccttccaatagcag |
892 |
Q |
| |
|
||||||||||||| |||||||| || |||||||| || || |||||||||||| ||||||| |||| |
|
|
| T |
11385788 |
ttctctccttccacaacagcatatgcaattggaagtatttggtcattaggatccattccaattgcag |
11385722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 257 - 374
Target Start/End: Complemental strand, 19836161 - 19836044
Alignment:
| Q |
257 |
tctgcctgtttgcttcccatctctccatcaagtacactctgatgtcctcacacatggtcaccactggcttacctctagctatgataatagttgagttaaa |
356 |
Q |
| |
|
||||||| ||||||||||| || ||||||| ||| | |||||||||||||||||| || || | |||||| ||||||| |||| ||| ||||||||||| |
|
|
| T |
19836161 |
tctgcctatttgcttcccacctttccatcatgtaaattctgatgtcctcacacatagtgacaattggctttcctctagggatgacaattgttgagttaaa |
19836062 |
T |
|
| Q |
357 |
tgtctctgacatgttatt |
374 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
19836061 |
agcctctgacatgttatt |
19836044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 4e-35; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 726 - 922
Target Start/End: Original strand, 23705951 - 23706147
Alignment:
| Q |
726 |
taccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaaccacttctaagattccttg |
825 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||| || | ||| | ||||||||| ||| |||| || || ||||| ||||||||| | |||||||| |
|
|
| T |
23705951 |
taccttttgttgatcactaataaatgtgtaagtcttgcataatctagttccacctaagtcaccaatcaggagttccaaaaaccacttccatgattccttt |
23706050 |
T |
|
| Q |
826 |
gtctctccttccaccacagcataagctattggaagcatctgatcattaggatcccttccaatagcagcgagcaacttcccaccatagtaacccttca |
922 |
Q |
| |
|
|| || ||||| |||||| || | ||||| |||| |||||| |||||||| ||||||||||| ||||| ||||||| ||||||||||||||||||| |
|
|
| T |
23706051 |
gtttcaccttcaaccacaacaaatgctataggaatcatctggtcattagggtcccttccaattgcagcaagcaactgtccaccatagtaacccttca |
23706147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 464 - 535
Target Start/End: Original strand, 23705684 - 23705755
Alignment:
| Q |
464 |
cacttatatccttgatctctttcatggcatcattgaatgcattttcataggttgcttttgctgccctccaca |
535 |
Q |
| |
|
|||| ||||| || ||||||||||| ||||| ||||||||| ||||| || ||||||||||||||||||| |
|
|
| T |
23705684 |
cactaatatcttttatctctttcattacatcaaggaatgcattctcataagtagcttttgctgccctccaca |
23705755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 575 - 645
Target Start/End: Original strand, 23705794 - 23705864
Alignment:
| Q |
575 |
aagttattgtacagatgcctgacacaaaacctttgatcaacatcaggtagtaactcatccatagccggcaa |
645 |
Q |
| |
|
||||||||||| || || ||||||||||| ||||| || ||||| ||||||| ||||||||||| ||||| |
|
|
| T |
23705794 |
aagttattgtaaaggtgtctgacacaaaatctttgttctacatccggtagtagttcatccatagcaggcaa |
23705864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 4e-35; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 265 - 661
Target Start/End: Complemental strand, 20623463 - 20623068
Alignment:
| Q |
265 |
tttgcttcccatctctccatcaagtacactctgatgtcctcacacatggtcaccactggcttacctctagctatgataatagttgagttaaatgtctctg |
364 |
Q |
| |
|
|||| |||||| |||||||||||||| ||||| || |||||| |||| ||||||||||| || || |||||||| | ||| || || || || | |||| |
|
|
| T |
20623463 |
tttgtttcccacctctccatcaagtatactctaatttcctcaaacattgtcaccactggttttcccctagctataacaatggtagaattgaaggcttctg |
20623364 |
T |
|
| Q |
365 |
acatgttattcaccaaagtgtcacattttttatcaccagtgaatttgtgtttgctccaatgcttggcaggaatatttttgagatactcatatgctccttc |
464 |
Q |
| |
|
||||||||||||||| |||||||||| | ||| |||||| || ||||||||||| | ||||| || || | ||||| ||||| |||||||| |
|
|
| T |
20623363 |
acatgttattcaccagagtgtcacatagtggtccactagtgaacttagacttgctccaatgtcttgcagggattttcataagatattcataagctccttc |
20623264 |
T |
|
| Q |
465 |
acttatatccttgatctctttcatggcatcattgaatgcattttcataggttgcttttgctgccctccacatcaactcctttaactttttcccaggatgn |
564 |
Q |
| |
|
|||||| || || |||||| ||| ||||||||||||||||| ||||| | |||||||||||| |||||||||| ||||| ||||| || ||||||| |
|
|
| T |
20623263 |
acttatctcttttatctctgccattgcatcattgaatgcattatcataactggcttttgctgccttccacatcaattccttcaacttctttccaggat-a |
20623165 |
T |
|
| Q |
565 |
nnnnnnnctaaagttattgtacagatgcctgacacaaaacctttgatcaacatcaggtagtaactcatccatagccggcaaaagaccctgcaatgta |
661 |
Q |
| |
|
|||||||| ||||| |||||||| ||||| || ||||| ||||| |||| |||| ||||||||||| || ||||| |||| ||||||| |
|
|
| T |
20623164 |
tttcttcctaaagttgttgtaaagatgcctcacacataatctttggtcaactccaggaagtagttcatccatagctggtaaaagtccctacaatgta |
20623068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 726 - 920
Target Start/End: Complemental strand, 20622995 - 20622801
Alignment:
| Q |
726 |
taccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaaccacttctaagattccttg |
825 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||| |||| ||| || ||||||| ||||||||| || || ||||| ||||| || | ||||| || |
|
|
| T |
20622995 |
taccttttgttgatcacttataaaagtgtaagtcaagcacaatctaggaccacctagatcagcaatgagtagttccaaaaaccattttcatgattctttt |
20622896 |
T |
|
| Q |
826 |
gtctctccttccaccacagcataagctattggaagcatctgatcattaggatcccttccaatagcagcgagcaacttcccaccatagtaaccctt |
920 |
Q |
| |
|
|| || ||||| ||||||||| | |||||||||||||| |||||||| || ||||||||||| ||||| | | || ||||||||||||||||| |
|
|
| T |
20622895 |
gtttccccttcaaccacagcaaatgctattggaagcatttgatcattggggtcccttccaattgcagccaagagctgtccaccatagtaaccctt |
20622801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 255 - 390
Target Start/End: Original strand, 37101837 - 37101972
Alignment:
| Q |
255 |
tttctgcctgtttgcttcccatctctccatcaagtacactctgatgtcctcacacatggtcaccactggcttacctctagctatgataatagttgagtta |
354 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||| || || | | |||| || |||| ||| || |||||||| |||||||| || || || |
|
|
| T |
37101837 |
tttctgcctatttgcttcccatctctccatcaggtacactctaatttctttaaacatagtgaccattggttttcctctagcaatgataatggtggaattg |
37101936 |
T |
|
| Q |
355 |
aatgtctctgacatgttattcaccaaagtgtcacat |
390 |
Q |
| |
|
|||||||| |||||||| ||||||| |||||||||| |
|
|
| T |
37101937 |
aatgtctcagacatgttgttcaccagagtgtcacat |
37101972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 726 - 892
Target Start/End: Original strand, 37102307 - 37102473
Alignment:
| Q |
726 |
taccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaaccacttctaagattccttg |
825 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| || ||||||||||| |||||||| || ||||||| ||||| ||| |||||| || |
|
|
| T |
37102307 |
taccttttgttggtcactaataaaagtgtaagtcaagcacaatccaggtccacctaagtcagcaatgagctgctccaaaaaccatttccaagattttttt |
37102406 |
T |
|
| Q |
826 |
gtctctccttccaccacagcataagctattggaagcatctgatcattaggatcccttccaatagcag |
892 |
Q |
| |
|
||||| ||||| |||| || | |||||||||||| |||| ||| || ||||||| |||||||| |
|
|
| T |
37102407 |
gtctccccttcaaccaatacaattgatattggaagcatttgataatttgggtcccttcaaatagcag |
37102473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 380
Target Start/End: Complemental strand, 38696843 - 38696725
Alignment:
| Q |
262 |
ctgtttgcttcccatctctccatcaagtacactctgatgtcctcacacatggtcaccactggcttacctctagctatgataatagttgagttaaatgtct |
361 |
Q |
| |
|
|||||||| |||||||| ||||||| ||||| || ||||| | |||||| | ||||||||| || ||| | ||||| ||||||||||| |||| | |
|
|
| T |
38696843 |
ctgtttgcctcccatctttccatcatatacaccctaatgtctttacacatagacaccactggttttgatcttggaatgatgatagttgagttgaatgctt |
38696744 |
T |
|
| Q |
362 |
ctgacatgttattcaccaa |
380 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
38696743 |
ctgacatattattcaccaa |
38696725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 3e-29; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 726 - 892
Target Start/End: Original strand, 21793446 - 21793612
Alignment:
| Q |
726 |
taccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaaccacttctaagattccttg |
825 |
Q |
| |
|
||||||||| ||||||||||| | ||||||||| || || ||||||| ||||| ||||||||||| |||||||||| |||||| || | ||||| ||| |
|
|
| T |
21793446 |
taccttttgctggtcactaattatagtgtaagtattgcaaagtcttgtgccacccaaatcagcaatgagaagctccagaaaccacatccatgattctttg |
21793545 |
T |
|
| Q |
826 |
gtctctccttccaccacagcataagctattggaagcatctgatcattaggatcccttccaatagcag |
892 |
Q |
| |
|
||||||||||||| |||||||| || |||||||| || || |||||||||||| ||||||| |||| |
|
|
| T |
21793546 |
ttctctccttccacaacagcatatgcaattggaagtatttggtcattaggatccattccaattgcag |
21793612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 265 - 661
Target Start/End: Complemental strand, 23331846 - 23331451
Alignment:
| Q |
265 |
tttgcttcccatctctccatcaagtacactctgatgtcctcacacatggtcaccactggcttacctctagctatgataatagttgagttaaatgtctctg |
364 |
Q |
| |
|
|||| |||||| |||||||||||||| ||||| || |||||| |||| ||||||||||| || || |||||||| | ||| || || || || | ||| |
|
|
| T |
23331846 |
tttgtttcccacctctccatcaagtatactctaatttcctcaaacattgtcaccactggttttcccctagctataacaatggtagaattgaaggcttcta |
23331747 |
T |
|
| Q |
365 |
acatgttattcaccaaagtgtcacattttttatcaccagtgaatttgtgtttgctccaatgcttggcaggaatatttttgagatactcatatgctccttc |
464 |
Q |
| |
|
||||||||||||||| |||||||||| | ||| |||||| || ||||||||||| | ||||| || || | ||||| ||||| |||||||| |
|
|
| T |
23331746 |
acatgttattcaccagagtgtcacatagtggtccactagtgaacttagacttgctccaatgtcttgcagggattttcataagatattcataagctccttc |
23331647 |
T |
|
| Q |
465 |
acttatatccttgatctctttcatggcatcattgaatgcattttcataggttgcttttgctgccctccacatcaactcctttaactttttcccaggatgn |
564 |
Q |
| |
|
|||||| | || |||||| ||| ||||||||||||||||| ||||| | || ||||||||| |||||||||| ||||| ||||| || ||||||| |
|
|
| T |
23331646 |
acttatctgttttatctctgccattgcatcattgaatgcattatcataactggcctttgctgccttccacatcaattccttcaacttctttccaggat-a |
23331548 |
T |
|
| Q |
565 |
nnnnnnnctaaagttattgtacagatgcctgacacaaaacctttgatcaacatcaggtagtaactcatccatagccggcaaaagaccctgcaatgta |
661 |
Q |
| |
|
|||||||| ||||| |||||||| ||||| || ||||| ||||| |||| |||| ||||||||||| || ||||| |||| ||||||| |
|
|
| T |
23331547 |
tttcttcctaaagttgttgtaaagatgcctcacacagaatctttggtcaactccaggaagtagttcatccatagctggtaaaagtccctacaatgta |
23331451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 726 - 893
Target Start/End: Complemental strand, 23331378 - 23331211
Alignment:
| Q |
726 |
taccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaaccacttctaagattccttg |
825 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||| |||| ||| | ||||||||||||||||| || |||||||| ||||| ||| | ||||| || |
|
|
| T |
23331378 |
taccttttgttgatcacttataaaagtgtaagtcaagcacaatctatgaccacctaaatcagcaataagtagctccaaaaaccatttccatgattctttt |
23331279 |
T |
|
| Q |
826 |
gtctctccttccaccacagcataagctattggaagcatctgatcattaggatcccttccaatagcagc |
893 |
Q |
| |
|
|| || ||||| ||||||||| | |||||||||||||| |||||||| || ||||||||||| ||||| |
|
|
| T |
23331278 |
gtttccccttcaaccacagcaaatgctattggaagcatttgatcattggggtcccttccaattgcagc |
23331211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 721 - 911
Target Start/End: Complemental strand, 24506066 - 24505876
Alignment:
| Q |
721 |
aaaactaccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaaccacttctaagatt |
820 |
Q |
| |
|
|||| |||||||||||| ||||||||||| ||||| ||||| |||| || ||||||||| |||||||| ||||||||||| ||||||||| | || | |
|
|
| T |
24506066 |
aaaattaccttttgttgatcactaataaaggtgtatgtcttgcacaacctgcttccacctaagtcagcaatcagaagctccaaaaaccacttccacgact |
24505967 |
T |
|
| Q |
821 |
ccttggtctctccttccaccacagcataagctattggaagcatctgatcattaggatcccttccaatagcagcgagcaacttcccaccata |
911 |
Q |
| |
|
|||| || || ||||| |||| | || | || ||||||||||| |||||||| |||||||| ||||| ||||| ||||| | ||||||||| |
|
|
| T |
24505966 |
cctttgtttcaccttctaccaaaacaaatgcaattggaagcatttgatcatttggatccctcccaattgcagctagcaattgcccaccata |
24505876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 418 - 536
Target Start/End: Complemental strand, 24506376 - 24506258
Alignment:
| Q |
418 |
ctccaatgcttggcaggaatatttttgagatactcatatgctccttcacttatatccttgatctctttcatggcatcattgaatgcattttcataggttg |
517 |
Q |
| |
|
||||||||||| |||||||| |||||| || |||||||| || || ||| ||||| ||||||||||| ||||||| |||||||||||||| ||| |
|
|
| T |
24506376 |
ctccaatgcttagcaggaatcaatttgaggtaatcatatgcaggttgacatatgtcctttatctctttcattgcatcatcaaatgcattttcataagtta |
24506277 |
T |
|
| Q |
518 |
cttttgctgccctccacat |
536 |
Q |
| |
|
| || |||||| ||||||| |
|
|
| T |
24506276 |
ccttagctgccttccacat |
24506258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 793 - 887
Target Start/End: Original strand, 21009112 - 21009206
Alignment:
| Q |
793 |
agaagctccaagaaccacttctaagattccttggtctctccttccaccacagcataagctattggaagcatctgatcattaggatcccttccaat |
887 |
Q |
| |
|
||||||||||||||||| ||| | || || |||||||||||||| || || ||| | || |||||||| || || ||||| |||||| ||||||| |
|
|
| T |
21009112 |
agaagctccaagaaccatttccaggactctttggtctctccttcaacaactgcaaatgcaattggaagtatttggtcatttggatccattccaat |
21009206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 726 - 893
Target Start/End: Original strand, 15811529 - 15811696
Alignment:
| Q |
726 |
taccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaaccacttctaagattccttg |
825 |
Q |
| |
|
||||||||| || ||||| || | ||| ||||| || | |||||| | ||||| |||||||| || ||||||||||| ||||| | | | ||||| || |
|
|
| T |
15811529 |
taccttttgctgatcacttattatagtataagttttgcgcagtctggtgccaccaaaatcagctatgagaagctccaaaaaccattcccatgattcttta |
15811628 |
T |
|
| Q |
826 |
gtctctccttccaccacagcataagctattggaagcatctgatcattaggatcccttccaatagcagc |
893 |
Q |
| |
|
|||||||||||||| | |||||| || |||||||| || || |||||||||||| ||||||| ||||| |
|
|
| T |
15811629 |
gtctctccttccacaagagcatatgcaattggaagtatttggtcattaggatccattccaattgcagc |
15811696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 726 - 892
Target Start/End: Complemental strand, 27654936 - 27654771
Alignment:
| Q |
726 |
taccttttgttggtcactaataaaagtgtaagtcttacacagtcttggtccacctaaatcagcaattagaagctccaagaaccacttctaagattccttg |
825 |
Q |
| |
|
||||||||| || |||||||| | ||||||||| || || ||||| | ||||| | || ||| || ||||||||||| ||||| | | ||||| || |
|
|
| T |
27654936 |
taccttttgctgatcactaattatagtgtaagttttgcaaagtctagtgccaccaagattagctatgagaagctccaaaaaccatgttcatgattcttta |
27654837 |
T |
|
| Q |
826 |
gtctctccttccaccacagcataagctattggaagcatctgatcattaggatcccttccaatagcag |
892 |
Q |
| |
|
||||||||||||| | ||||||||| |||||||| || || |||||||||||| ||||||| |||| |
|
|
| T |
27654836 |
ttctctccttccacgatagcataagcaattggaagtat-tggtcattaggatccattccaattgcag |
27654771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 775 - 893
Target Start/End: Original strand, 1261 - 1379
Alignment:
| Q |
775 |
ccacctaaatcagcaattagaagctccaagaaccacttctaa-gattccttggtctctccttccaccacagcataagctattggaagcatctgatcatta |
873 |
Q |
| |
|
||||| ||||||||||| ||||||||||| ||||| |||| | ||||| || ||||||||||| || ||| |||| || |||||||| || || |||||| |
|
|
| T |
1261 |
ccacccaaatcagcaatgagaagctccaaaaacca-ttctcatgattctttagtctctccttcaacaacatcatatgcaattggaagtatttggtcatta |
1359 |
T |
|
| Q |
874 |
ggatcccttccaatagcagc |
893 |
Q |
| |
|
|||||| ||||||| ||||| |
|
|
| T |
1360 |
ggatccattccaattgcagc |
1379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 262 - 389
Target Start/End: Complemental strand, 20067524 - 20067397
Alignment:
| Q |
262 |
ctgtttgcttcccatctctccatcaagtacactctgatgtcctcacacatggtcaccactggcttacctctagctatgataatagttgagttaaatgtct |
361 |
Q |
| |
|
|||||||| |||||| | |||||||| |||||||| ||||| |||||||| ||||||||||| || ||| | ||||| || ||||||||||||| | |
|
|
| T |
20067524 |
ctgtttgcctcccatttttccatcaaatacactctaatgtcttcacacatcgtcaccactggttttgatcttggaatgatgatggttgagttaaatgctt |
20067425 |
T |
|
| Q |
362 |
ctgacatgttattcaccaaagtgtcaca |
389 |
Q |
| |
|
| ||||||||||| ||||| || ||||| |
|
|
| T |
20067424 |
cggacatgttattaaccaatgtatcaca |
20067397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 844 - 911
Target Start/End: Original strand, 19011915 - 19011982
Alignment:
| Q |
844 |
gcataagctattggaagcatctgatcattaggatcccttccaatagcagcgagcaacttcccaccata |
911 |
Q |
| |
|
||||| || ||||| ||||| ||||||||||||||||||||||||||||| |||| || |||||||| |
|
|
| T |
19011915 |
gcatatgcaattggtagcatttgatcattaggatcccttccaatagcagccagcagctgaccaccata |
19011982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 461 - 561
Target Start/End: Original strand, 29018 - 29118
Alignment:
| Q |
461 |
cttcacttatatccttgatctctttcatggcatcattgaatgcattttcataggttgcttttgctgccctccacatcaactcctttaactttttcccagg |
560 |
Q |
| |
|
||||||| ||||| |||||||| ||||| ||||| ||||| ||||| ||||| ||||| | | |||||||||||| ||||| || ||||| || ||||| |
|
|
| T |
29018 |
cttcactaatatctttgatctccttcatagcatctttgaaagcattatcataagttgccctggttgccctccacattaactctttcaacttcttaccagg |
29117 |
T |
|
| Q |
561 |
a |
561 |
Q |
| |
|
| |
|
|
| T |
29118 |
a |
29118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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