View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5313-Insertion-2 (Length: 1137)
Name: NF5313-Insertion-2
Description: NF5313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5313-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 557; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 335 - 1101
Target Start/End: Original strand, 46748515 - 46749307
Alignment:
| Q |
335 |
ggatgagtcatgtaatgaaatcactttcacgttagaaaatttggtttgacacatgtacgttttagacggaaaagactgacttactatgacgtagatgtat |
434 |
Q |
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| T |
46748515 |
ggatgagtcatgtaatgaaataacttccacgtcagaaaatttagtttgacatatgtaccttttagacggaaaagactaacttactatgatgtagatgtat |
46748614 |
T |
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| Q |
435 |
agttagcttcaattctttaaacttaaataactagaaatatgcactttgcaaacgctaaacataaacaacatatggcgtggcgagtaatcaaaatcatgta |
534 |
Q |
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| T |
46748615 |
agttagcttcaattctttaaacttaaataactagaaatatgcactttgcaaacgctaaacataatcaacctatggcgtggcgagtaatcaaaatcatgta |
46748714 |
T |
|
| Q |
535 |
agataaaaccatacttaagatgaacttcacatgtatccatctacgcataatgttaacccaagtatgaattgatcacatgtcaactcatggggatacacca |
634 |
Q |
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| T |
46748715 |
agataaaaccatacttaaaatgaacttcacatgtatccatctacgcataatgttaacccaagtatgaattgatcacatgttaactcatggggatacacca |
46748814 |
T |
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| Q |
635 |
cattaatttatcac--atctcatataaagttacacagttaatttacatagtcacttgataacattcacttaagtcacacattgatgcatagagacacaaa |
732 |
Q |
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| T |
46748815 |
cattaatttatcacatatctcatataaagttacacagttaatttacatagtcacttgataacattcacttaagtcacacattgatgcatagagacacaaa |
46748914 |
T |
|
| Q |
733 |
catactcacacattgaaactgacacttcccttaacactttccatgatatatttattactaaacacacaacatgataacaatgcattgcaaatcacacaca |
832 |
Q |
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| T |
46748915 |
catactcacacattgaaactgacacttcccttaacactttccatgatatatttattactaaacacacaatatgataacaatgcattgcaaatcacacaca |
46749014 |
T |
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| Q |
833 |
tatttatgaaacacttcgtctcacacttgatatc--atatcactccaaacactttgtaaggaacattgtactatactcttgtaggagac-aacacattca |
929 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
46749015 |
tatttatgaaacacttcgtctcacacttgatatcatatatcactccaaacactttgtaaggaacattgtactatactcttgtaggagacaaacacattca |
46749114 |
T |
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| Q |
930 |
tgtcttcac-aattcactc-actcatcttga-gtccatctaagtgactagatg-agtaaa--ttggttgcat----tggtagc-tttgacat--gtgtgc |
1016 |
Q |
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| T |
46749115 |
agtcttcacaaattcactcaactcatcttgaggtccatctaagtgactagatgaagtaaaattgggttgcattgcatggtagcttttgacattgttgtgc |
46749214 |
T |
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| Q |
1017 |
tttcttc-agtcacttagaaatcctctct-aagtatcc-tgtgat-caac-agtgaatctctatcat--agctcatac-cttgtactttcgtg |
1101 |
Q |
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| T |
46749215 |
tttcttcaagtcacttagaaatcctctctaaagtatccttgtgatccaacaagtgaatctctatcattaggctcatacacttgtactttcgtg |
46749307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 261
Target Start/End: Original strand, 46748187 - 46748441
Alignment:
| Q |
7 |
actaattactatataaacaannnnnnnactttgaacaaattttgaagggactaaatactactaaatcttcactgcttgtttccaaggttgaaatcttcaa |
106 |
Q |
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| T |
46748187 |
actaattactatataaacaatttttttactttgaacaaattttgaagggactaaatactactaaatcttcacttcttgtttccaaggttgaaatcttcaa |
46748286 |
T |
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| Q |
107 |
tttcctagcatccaaaacatgcctaacattttctctaggtatccgaagtgttgacatggacagggaaccccattgggttccaaatagcacaagggattac |
206 |
Q |
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| T |
46748287 |
tttcctagcatccaaaacatgactaacattttctctaggtatccgaagtgttgacatggacagggaaccccattgggttccaaatagcacaagggattac |
46748386 |
T |
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| Q |
207 |
aacaatgaatcatcatccatggtggttttggtagaaaaagaaacaatgtttgatg |
261 |
Q |
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| T |
46748387 |
aacaatgaatcatcatccatggtggttttggtagaaaaagaaacaatgtttgatg |
46748441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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