View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5313-Insertion-3 (Length: 1119)
Name: NF5313-Insertion-3
Description: NF5313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5313-Insertion-3 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 636; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 230 - 901
Target Start/End: Complemental strand, 13582206 - 13581535
Alignment:
| Q |
230 |
ttgttcaactattttaatccaactacccaatccccaatcagttcaactagttgaattggatatcagcaagatgatcgttttaagtgtggttgaaccaagt |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13582206 |
ttgttcaactattttaatccaactacccaatccccaatcagttcaactagttgaattggatatcagcaagatgatcgttttaagtgtggttgaaccaagc |
13582107 |
T |
|
| Q |
330 |
aaatcatgatcggtgaactcgatatttataacattctagctttatgctttaccactcaatgtttgataaatgaggaaattgtggaacaagtgaatttgtt |
429 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13582106 |
aaatcatgatcggtgaactcgatatttacaacattctagctttatgcttcaccactcaatgtttgataaatgaagaaattgtggaacaagtgaatttgtt |
13582007 |
T |
|
| Q |
430 |
ttcaatgtgcaaatttggtttcaatgcaatggagattgagctcaaaggagactattcaagtcctcaaacctctttcaaagttggtatcgatgaatgtaag |
529 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13582006 |
ttcaatgagcaaatttggtttcaatgcaatggagattgagctcaaaggagactattcaagtcctcaaacctctttcaaagttggtatcgatgaatataag |
13581907 |
T |
|
| Q |
530 |
cattaaagggaatatcaaaaacatactgatagtttggaatacctttgccttcatcatatccacttattcttttggaaatttttacttaattccaaataag |
629 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13581906 |
cattaaagggaatatcaaaaacatactgatagtttggaatacctttgccttcatcatatccacttattcttttggaaatttttacttaattccaaataag |
13581807 |
T |
|
| Q |
630 |
tttagaaattggcaaatatacagacatttgtaaaagaaaaattgatatttatagcgaatgtatgtacgcaaatctgtcttgagagcgaaagcagcatgtt |
729 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
13581806 |
tttagaaattggcaaatatacagacatttgtaaaagaaaaattgatatttatagcgaatgtatgtacgcaaatctgtcttgagagcgaaagcggtgtgtt |
13581707 |
T |
|
| Q |
730 |
tcgattggatccaccaagtctttgtattctgctaaacaacgtatttcgattgctcagtttctctgtctatcgtatatctttcgtagtctaggattgaact |
829 |
Q |
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| T |
13581706 |
tcgattggatccaccaagtctttgtattctgctaaacaacgtatttcgattgctcagtttctctgtctatcgtatatctttcgtagtctaggattgaact |
13581607 |
T |
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| Q |
830 |
tataaggatgatattgaatttgtatgcaaagttagccagacaaaagtgtgattccaaatgagaagttatagt |
901 |
Q |
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| T |
13581606 |
tataaggatgatattgaatttgtatgcaaagttagccagacaaaagtgtgattccaaatgagaagttatagt |
13581535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 6e-74
Query Start/End: Original strand, 8 - 216
Target Start/End: Complemental strand, 13582477 - 13582268
Alignment:
| Q |
8 |
attttatcatccaaaagtaatgttttaaaaattgaattctacctnnnnnnnngttgaatttaattgttcataaggtctattcagcaatgtcgatattaat |
107 |
Q |
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| T |
13582477 |
attttatcatccaaaagtaatgttttaaaaattgaattctacctaaaaaaaagttaaatttaattgttcataaggtttattcagcaatgtcgatattgat |
13582378 |
T |
|
| Q |
108 |
agattaaaacatctttgtttggattcaaactcgtaacttaaattataaatgtatgtgtt-tcgatggcacttgacacttccttcttaaacctacagaaaa |
206 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||| || |||||| |
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| T |
13582377 |
agattagaacatctttgtttggattcaaactcgtaacttaaattaaaaatgtatgtgttatcgatggcactctacacttccttcttaaacttaaagaaaa |
13582278 |
T |
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| Q |
207 |
tttgaatcaa |
216 |
Q |
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| T |
13582277 |
tttgaatcaa |
13582268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 897 - 1071
Target Start/End: Complemental strand, 13581510 - 13581330
Alignment:
| Q |
897 |
atagtacgctgactaatttgcaaattacaatttgatgtaatacaaattacaaactgacataatttcaccaaatgtannnnnnnncatagac-attc-aat |
994 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| |
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| T |
13581510 |
atagtacgctgactaatttgcaaattacaatttgatgtaatacaaattacaaactgacataatttcaccaaatgtattttttttcatagacaattcaaat |
13581411 |
T |
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| Q |
995 |
taatccacccttaactggaatttg-aaattgcaaacttgcttaaa--catggaatgatag-tatcagatttgcatattccc |
1071 |
Q |
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| T |
13581410 |
taagccacccttaactggaatttgaaaattgcaaacttgcttaaaacaatggaatgatagttatcagatttgcatattccc |
13581330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 441 - 511
Target Start/End: Original strand, 62742 - 62812
Alignment:
| Q |
441 |
aatttggtttcaatgcaatggagattgagctcaaaggagactattcaagtcctcaaacctctttcaaagtt |
511 |
Q |
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|||||||||||||||||| ||| |||||||| ||||| ||||||||||||||| || || || ||||||| |
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| T |
62742 |
aatttggtttcaatgcaacggacattgagcttgaaggaaactattcaagtcctcgaaactattccaaagtt |
62812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 441 - 511
Target Start/End: Complemental strand, 21321057 - 21320987
Alignment:
| Q |
441 |
aatttggtttcaatgcaatggagattgagctcaaaggagactattcaagtcctcaaacctctttcaaagtt |
511 |
Q |
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| T |
21321057 |
aatttggtttcaatgcaacggacattgagcttgaaggaaactattcaagtcctcgaaactattccaaagtt |
21320987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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