View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5313-Insertion-4 (Length: 1110)
Name: NF5313-Insertion-4
Description: NF5313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5313-Insertion-4 |
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Alignment Details
Target: chr6 (Bit Score: 742; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 742; E-Value: 0
Query Start/End: Original strand, 85 - 890
Target Start/End: Original strand, 9552085 - 9552890
Alignment:
| Q |
85 |
cttctaccaaatggaaagattatgaaaagggtgatgatggtgtttcaagttatggaaatgaattgaatttgaatttgcctcttgtgagtggtgtgaagaa |
184 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9552085 |
cttctaccaaatggaaagatgatgaaaagggtgattatagtgtttcaagttatggaaatgaattgaatttgaatttgcctcttgtgagtggtgtgaagaa |
9552184 |
T |
|
| Q |
185 |
tgagtccattgattgtgttgaaaatggtattcaagaatgtgatttgaatatggnnnnnnnntgttgcttcatgagatcttcaatatgtagaatttcactt |
284 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9552185 |
tgagtccattgattgtgttgaaaatggtattcaagaatgtgatttgaatatagaaaaaaaatgttgcttcatgagatcttcaatatgtagaatttcactt |
9552284 |
T |
|
| Q |
285 |
tgtgttcttgaaatgccactttacttgccaaggagattaacaattcctattatttgtgaagagaaatggtcaaaactatatgcaatttcttcaatgatat |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9552285 |
tgtgttcttgaaatgccactttacttgccaaggagattaacaattcctattatttgtgaagagaaatggtcaaaactatatgcaatttcttcaatgatat |
9552384 |
T |
|
| Q |
385 |
tagcaccaattctcttatctttcctatggaacactcataagggatatagtatttcaagcacaaaccttattgtttatggaattggatttttaattgggat |
484 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9552385 |
tagcaccaattctcttatctttcctatggaacactcataagggatatagtatttcaagcacaaaccttattgtttatggaattggatttttaattgggat |
9552484 |
T |
|
| Q |
485 |
tatttttggtgtaatagcatttttcacaacagaaatgttagtgccacctaaaaggtatttatctccttggcttgtaggagggtttataatgagtgtgaca |
584 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
9552485 |
tatttttggtgtaatagcatttttcacaacagaaatgttagtgccacctaaaaggtatttatttccttggcttgtaggagggtttataatgagtgtgaca |
9552584 |
T |
|
| Q |
585 |
tggagttacattatagctgaagagttggttggattgttggtttcaattggtttcatttgtagaattagtccttcaattttagggttaacagttctagctt |
684 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
9552585 |
tggagttacattatagctgaagagttggttggtttgttggtttcaattggtttcatttgtagaattagtccttcaattttagggttaacggttctagctt |
9552684 |
T |
|
| Q |
685 |
ggggtaactcaattggtgatttgatgacaaatttaacaatggctttatatggtggacaagaaggggttcaaatagcaatttcaggttgctatgctggtcc |
784 |
Q |
| |
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| T |
9552685 |
ggggtaactcaattggtgatttgatgacaaatttaacaatggctttatatggtggacaagaaggggttcaaatagcaatttcaggttgctatgccggtcc |
9552784 |
T |
|
| Q |
785 |
tatctttaatactcttgttggattagggttttctcttgtaagttctacttggttagaatatccacaagctattgtgattcctaaagatccatatctttgg |
884 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
9552785 |
tatctttaatactcttgttggattaggattttctcttgtaagttctacttggttagaatatccacaacctattgtgattcctaaagatccatatctttgg |
9552884 |
T |
|
| Q |
885 |
gagaca |
890 |
Q |
| |
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|||||| |
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|
| T |
9552885 |
gagaca |
9552890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 5e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 5e-56
Query Start/End: Original strand, 563 - 890
Target Start/End: Complemental strand, 33700343 - 33700016
Alignment:
| Q |
563 |
agggtttataatgagtgtgacatggagttacattatagctgaagagttggttggattgttggtttcaattggtttcatttgtagaattagtccttcaatt |
662 |
Q |
| |
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||||||||| |||||||||||||||||||||||| |||| ||||||| || || ||||| |||||| |||||||||| ||| | ||| ||||||||| |
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| T |
33700343 |
agggtttatgatgagtgtgacatggagttacatttcagctcaagagttagtagggttgttagtttcacttggtttcatatgtggtgttaatccttcaata |
33700244 |
T |
|
| Q |
663 |
ttagggttaacagttctagcttggggtaactcaattggtgatttgatgacaaatttaacaatggctttatatggtggacaagaaggggttcaaatagcaa |
762 |
Q |
| |
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| || |||||||| || |||||||| || |||||||||||||| | || ||||| |||||||||||| ||||||| | ||| |||| ||||||||||| |
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| T |
33700243 |
cttggattaacagtacttgcttgggggaattcaattggtgatttagtaactaatttgacaatggctttaaatggtgggccagagggggctcaaatagcaa |
33700144 |
T |
|
| Q |
763 |
tttcaggttgctatgctggtcctatctttaatactcttgttggattagggttttctcttgtaagttctacttggttagaatatccacaagctattgtgat |
862 |
Q |
| |
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|||||||||| ||||||||||||||||| ||||| |||||||||| || || |||||||| | ||||||||| || || || | |||||||||| |
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| T |
33700143 |
tttcaggttgttatgctggtcctatcttcaatacagttgttggattgggattatctcttgttacatctacttggagtgagtacccttcatctattgtgat |
33700044 |
T |
|
| Q |
863 |
tcctaaagatccatatctttgggagaca |
890 |
Q |
| |
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| T |
33700043 |
tcctagagatccatatttgtgggagaca |
33700016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 260 - 377
Target Start/End: Complemental strand, 33700649 - 33700532
Alignment:
| Q |
260 |
atcttcaatatgtagaatttcactttgtgttcttgaaatgccactttacttgccaaggagattaacaattcctattatttgtgaagagaaatggtcaaaa |
359 |
Q |
| |
|
||||||||||| |||||| | ||||| |||| | || ||||| ||||||||||| |||||||||||||||||| || |||||||||| |||||||| ||| |
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| T |
33700649 |
atcttcaatatttagaatgttactttatgttttggatatgcctctttacttgcctaggagattaacaattcctgttgtttgtgaagaaaaatggtctaaa |
33700550 |
T |
|
| Q |
360 |
ctatatgcaatttcttca |
377 |
Q |
| |
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||||||| |||||||| |
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| T |
33700549 |
gcatatgcagtttcttca |
33700532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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