View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5313-Insertion-5 (Length: 926)
Name: NF5313-Insertion-5
Description: NF5313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5313-Insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 853; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 853; E-Value: 0
Query Start/End: Original strand, 8 - 920
Target Start/End: Original strand, 37809457 - 37810368
Alignment:
| Q |
8 |
agaataagatcaggatgattgctgatcatatgattgacagtggatgtcgtattgtatgtaagacctaagtctccaaccacggcgattctgctagggtaac |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37809457 |
agaataagatcaggatgattgctgatcatatgattgacagtggatgtcgtattgtatgtaagacctaagtctccaaccacggcgattctgctagggtaac |
37809556 |
T |
|
| Q |
108 |
tcttgggacctgaaaccggcattgttctgaaataatgaacatcactcattgctgacaaagaaggatctccacattgatattgatatagtgtgttgggctt |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37809557 |
tcttgggacctgaaaccggcattgttctgaaataatgaacatcactcattgctgacaaagaaggatctccacattgatattgatatagtgtgttgggctt |
37809656 |
T |
|
| Q |
208 |
taaccctgcagcaaagagagtagagttctacattagttcttcaaaaataaccaggcatatgtcaagcttgactagacttgacatagaatgactaggcagt |
307 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37809657 |
taatcctgcagcaaagagagtagagttctacattagttcttcaaaaataaccaggcatatgtcaagcttgactcgacttgacatagaatgactaggcagt |
37809756 |
T |
|
| Q |
308 |
ggattaattactttaaagtattttgttccttttcaatcttgtttcattcctcttaaaatttgagttgtgtctaatttttaacaaatgttcaggccatgca |
407 |
Q |
| |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||| |
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| T |
37809757 |
ggattaatgactttaaaatattttgttccttttcaatcttgtttcattcctcttaaaatttgagttgtgtctaatttttaacgaatgttaaggccacgca |
37809856 |
T |
|
| Q |
408 |
gttatctaatttgaaactctcaacacctttcgggtcccataactaaatctctgaagtgttgacacaaactaaacacattttgacaatgacacgtagacat |
507 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||| |||||||| |
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| T |
37809857 |
gttatctaatgtgaaactctcaacacctttcgggtcccataactaaatctctaaagtgttgacacaaaccaaacatattttgacaatgacatgtagacat |
37809956 |
T |
|
| Q |
508 |
tgataactatttgagaaagtgaacgtgattgaatataaccacatgtgctactgttatacgagtatcgaacatcaaggactaacacatgttgggcactgac |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37809957 |
tgataactatttgagaaagtgaacgtgattgaatataaccacatgtgctactgttatacgagtatcgaacatcaaggactaacaca-cttgggcactgac |
37810055 |
T |
|
| Q |
608 |
gccttcaacccaaagtatcggtgttacataacctatagctactaatttggccatatgactagtactctaaacgcttctctttcaaggcatgagtcaatat |
707 |
Q |
| |
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| T |
37810056 |
gccttcaacccaaagtatcggtgttacataacctatagctactaatttggccatatgactagtactctaaacgcttctctttcaaggcatgagtcaatat |
37810155 |
T |
|
| Q |
708 |
atttggaataaagaagtagtgcatgtgacacaaaataatgcttgtactaagtcaaagtgttaatatacctgtgagacgaacatgatgtataattccagaa |
807 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37810156 |
atttggaataaagaagtagtgcatgtgacacaaaataatgcttgtactaagtcaaagtgttaatatacctgtgagacgaacatgatgtataattccagaa |
37810255 |
T |
|
| Q |
808 |
gtatagttctgaagtccttcaaaaggatatagctgactatacacaagggaataaccaacagcttggccattcattgaccttccaaaccttccatattgaa |
907 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37810256 |
gtatagttctgaagtccttcaaaaggatatagctgactatacacaagggaataaccaacagcttggccattcattgaccttccaaaccttccatattgaa |
37810355 |
T |
|
| Q |
908 |
ctatgctaccaac |
920 |
Q |
| |
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||||||||||||| |
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|
| T |
37810356 |
ctatgctaccaac |
37810368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 37816925 - 37817143
Alignment:
| Q |
8 |
agaataagatcaggatgattgctgatcatatgattgacagtggatgtcgtattgtatgtaagacctaagtctccaaccacggcgattctgctagggtaac |
107 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||| | |
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| T |
37816925 |
agaataagatcaggatgattgccggtcatatgattgacagtagatgtggtattgtatgtaagacctaagtctccgaccactgcgattctactagggtagc |
37817024 |
T |
|
| Q |
108 |
tcttgggacctgaaaccggcattgttctgaaataatgaacatcactcattgctgacaaagaaggatctccacattgatattgatatagtgtgttgggctt |
207 |
Q |
| |
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||||||| |||||||| |||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || |
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| T |
37817025 |
tcttggggcctgaaactggcattgtcctaaaataatgaacatcactcattgctggtaaagaaggatctccacattgatattggtatagtgtgttgggttt |
37817124 |
T |
|
| Q |
208 |
taaccctgcagcaaagaga |
226 |
Q |
| |
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|| ||||||||||||||| |
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| T |
37817125 |
caaacctgcagcaaagaga |
37817143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 754 - 920
Target Start/End: Original strand, 37818159 - 37818325
Alignment:
| Q |
754 |
ctaagtcaaagtgttaatatacctgtgagacgaacatgatgtataattccagaagtatagttctgaagtccttcaaaaggatatagctgactatacacaa |
853 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
37818159 |
ctaagtcaaagtgttaatatacctgtgagacgaacatgatgtataattccagaagtgtagttctgaagtccttcgaaaggatatagctgactatacacaa |
37818258 |
T |
|
| Q |
854 |
gggaataaccaacagcttggccattcattgaccttccaaaccttccatattgaactatgctaccaac |
920 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
37818259 |
gggaataaccaacagcttggacattcattgaccttccaaatcttccatattgaactatgctatcaac |
37818325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 774 - 857
Target Start/End: Complemental strand, 19905441 - 19905358
Alignment:
| Q |
774 |
acctgtgagacgaacatgatgtataattccagaagtatagttctgaagtccttcaaaaggatatagctgactatacacaaggga |
857 |
Q |
| |
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||||||||| ||||||||||| || ||||||||||| || |||||||| |||||||||||||| ||||| || ||||||||||| |
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| T |
19905441 |
acctgtgagccgaacatgatggatgattccagaagtgtaattctgaagaccttcaaaaggataaagctggctgtacacaaggga |
19905358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 516 - 554
Target Start/End: Complemental strand, 34443090 - 34443052
Alignment:
| Q |
516 |
atttgagaaagtgaacgtgattgaatataaccacatgtg |
554 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||| |
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|
| T |
34443090 |
atttgagaaagtgaaagtgattgaatgtaaccacatgtg |
34443052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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