View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5313-Insertion-6 (Length: 579)
Name: NF5313-Insertion-6
Description: NF5313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5313-Insertion-6 |
 | |
|
| [»] scaffold1572 (1 HSPs) |
| | |
|
| [»] scaffold0197 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 312
Target Start/End: Complemental strand, 21318755 - 21318451
Alignment:
| Q |
10 |
aacacccacctactctcaatttagatataagattgatgaaagagtttccctatttcatagctgaatcaaaaacattcaagatttatctaacaaaagcaag |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21318755 |
aacacccacctactctcaatttagatataagattgatgacagagtttccctatttcatagctgaatcaaaaacattcaagatttatcttacaaaagcaag |
21318656 |
T |
|
| Q |
110 |
tagattgattcactttgttaattctgaacaaacacatagtggatcaaaacatcgttacaagagcataataggttatgattcaaaacatataattacaaaa |
209 |
Q |
| |
|
||||||||||| ||| | |||||||||||||||||| | ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21318655 |
tagattgattcgcttcctgaattctgaacaaacacatgattgatcagaacatcattacaagagcataataggttatgattcaaaacatataattacaaaa |
21318556 |
T |
|
| Q |
210 |
agaaatcaaaatgagcaaaaccttaacagagcaagacctttggaataaagccttgagaatgcacagaagttgaatatcc--atgggcataatagtaactc |
307 |
Q |
| |
|
|||||||||||||| | ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
21318555 |
agaaatcaaaatgaaccaaaccttaacagaacaagacctatggaataaagccttgagaatgcacagaagttgaatatccatatgggcataatagtaactc |
21318456 |
T |
|
| Q |
308 |
tctaa |
312 |
Q |
| |
|
||||| |
|
|
| T |
21318455 |
tctaa |
21318451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 3854761 - 3854688
Alignment:
| Q |
37 |
taagattgatgaaagagtttccctatttcatagctgaatcaaaaacattcaagatttatctaacaaaagcaagt |
110 |
Q |
| |
|
||||| |||||| | | ||||||||||||| || |||||| |||||||||||| ||||||| |||||||||||| |
|
|
| T |
3854761 |
taagactgatgacaaaatttccctatttcacagttgaatccaaaacattcaagttttatcttacaaaagcaagt |
3854688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 374
Target Start/End: Complemental strand, 3854528 - 3854431
Alignment:
| Q |
276 |
aagttgaatatccatgggcataatagtaactctctaagcatcaaatacacagaagttagtaactttaaaagctttgagaatgataaactcttgaataga |
374 |
Q |
| |
|
||||||||||||| | | ||||||||||||||||| ||| |||| | ||||||||| |||||||||||| |||| ||||| ||||||| ||||||| |
|
|
| T |
3854528 |
aagttgaatatcctttg-cataatagtaactctcttagcgtcaatgccgcagaagttaagaactttaaaagccttgataatgacaaactctcgaataga |
3854431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 3915012 - 3915061
Alignment:
| Q |
66 |
atagctgaatcaaaaacattcaagatttatctaacaaaagcaagtagatt |
115 |
Q |
| |
|
|||| ||||||||||||||| ||| ||||||| ||||||||||||||||| |
|
|
| T |
3915012 |
atagatgaatcaaaaacattaaagttttatctcacaaaagcaagtagatt |
3915061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 316
Target Start/End: Original strand, 3929962 - 3930002
Alignment:
| Q |
276 |
aagttgaatatccatgggcataatagtaactctctaagcat |
316 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||| ||||| |
|
|
| T |
3929962 |
aagttgaatatccttcggcataatagtaactctcttagcat |
3930002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 316
Target Start/End: Complemental strand, 21317701 - 21317661
Alignment:
| Q |
276 |
aagttgaatatccatgggcataatagtaactctctaagcat |
316 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||| ||||| |
|
|
| T |
21317701 |
aagttgaatatccttaggcataatagtaactctcttagcat |
21317661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1572 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold1572
Description:
Target: scaffold1572; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 258
Target Start/End: Original strand, 1384 - 1632
Alignment:
| Q |
10 |
aacacccacctactctcaatttagatataagattgatgaaagagtttccctatttcatagctgaatcaaaaacattcaagatttatctaacaaaagcaag |
109 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1384 |
aacacccacctactcgcaatttagacataagattgatgaccaagtttccctatttcatagctgaatcaaaaacattcaagatttatctaacaaaagcaag |
1483 |
T |
|
| Q |
110 |
tagattgattcactttgttaattctgaacaaacacatagtggatcaaaacatcgttacaagagcataataggttatgattcaaaacatataattacaaaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1484 |
tagattgattcactttgttaattctgaacaaacacatagtggatcagaacatcgttacaagagcataataggttatgattcaaaacatataattacaaaa |
1583 |
T |
|
| Q |
210 |
agaaatcaaaatgagcaaaaccttaacagagcaagacctttggaataaa |
258 |
Q |
| |
|
|||||||||||||| | ||||||||||||| |||||||| ||||||||| |
|
|
| T |
1584 |
agaaatcaaaatgaaccaaaccttaacagaacaagacctatggaataaa |
1632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 316
Target Start/End: Complemental strand, 31138 - 31098
Alignment:
| Q |
276 |
aagttgaatatccatgggcataatagtaactctctaagcat |
316 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||| ||||| |
|
|
| T |
31138 |
aagttgaatatccttaggcataatagtaactctcttagcat |
31098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University